CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bra024804
(
Brassica rapa
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00249 (Myb_DNA-binding)
IPR014778
Bra024804
T267973_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
MYB124
M01267_2.00
Arabidopsis thaliana
NNVCGCKCBN
NVGMGCGBNN
PBM
Lambert et al.(2019)
pTH11556
0.855
0.934
MYB88
M07042_2.00
Arabidopsis thaliana
NNNHNACGCKCCDHH
DDHGGMGCGTNDNNN
Dap-seq
OMalley et al.(2016)
MYB88_col_a
0.825
0.923
MYB88
M07043_2.00
Arabidopsis thaliana
NNNACGCTCCHNN
NNDGGAGCGTNNN
Dap-seq
OMalley et al.(2016)
MYB88_colamp_a
0.825
0.923
MYB88
M11038_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MYB88_01
0.825
0.923
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bra024804.1-P
Myb
20
65
VTWSQEEDDILRKQITLHGTDNWAIIASNFTDKSTRQCRRRWYTYL
Bra024804.1-P
Myb
71
115
RGGWSPEEDTLLCEAQRVFGNRWTEIAKVVSGRTDNAVKNRFTTL
Links
Other
Myb/SANT
family TFs
Other
Brassica rapa
TFs
70 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Bo7g080730
Brassica oleracea
Bo7g080730
I
0.879
Bo2g136560
Brassica oleracea
Bo2g136560
I
0.862
Thhalv10004109m.g
Eutrema salsugineum
Thhalv10004109m.g
I
0.862
MYB124
Arabidopsis thaliana
AT1G14350
D
0.855
TCM_011776
Theobroma cacao
TCM_011776
I
0.840
Carubv10011707m.g
Capsella rubella
Carubv10011707m.g
I
0.839
Bostr.13671s0016
Boechera stricta
Bostr.13671s0016
I
0.839
Cagra.3501s0066
Capsella grandiflora
Cagra.3501s0066
I
0.839
Thhalv10007659m.g
Eutrema salsugineum
Thhalv10007659m.g
I
0.837
Bo5g019500
Brassica oleracea
Bo5g019500
I
0.837
Bra019658
Brassica rapa
Bra019658
I
0.837
Gorai.013G083300
Gossypium raimondii
Gorai.013G083300
I
0.836
MYB88
Arabidopsis lyrata
fgenesh2_kg.5__181__AT2G02820.2
I
0.825
MYB88
Arabidopsis thaliana
AT2G02820
D
0.825
29736.m002013
Ricinus communis
29736.m002013
I
0.822
evm.TU.supercontig_183.27
Carica papaya
evm.TU.supercontig_183.27
I
0.818
Bostr.0556s0099
Boechera stricta
Bostr.0556s0099
I
0.815
cassava35260.valid.m1
Manihot esculenta
cassava35260.valid.m1
I
0.810
POPTR_0010s10310
Populus trichocarpa
POPTR_0010s10310
I
0.810
cassava39089.m1
Manihot esculenta
cassava39089.m1
I
0.810
Gorai.005G139500
Gossypium raimondii
Gorai.005G139500
I
0.810
SapurV1A.0062s0030
Salix purpurea
SapurV1A.0062s0030
I
0.810
MDP0000165523
Malus domestica
MDP0000165523
I
0.810
FLP
Arabidopsis lyrata
fgenesh2_kg.1__1561__AT1G14350.1
I
0.800
Cagra.0534s0022
Capsella grandiflora
Cagra.0534s0022
I
0.794
Carubv10017119m.g
Capsella rubella
Carubv10017119m.g
I
0.794
GLYMA08G40950
Glycine max
GLYMA08G40950
I
0.793
PRUPE_ppa017536mg
Prunus persica
PRUPE_ppa017536mg
I
0.788
Pm006532
Prunus mume
Pm006532
I
0.788
VIT_01s0026g01910
Vitis vinifera
VIT_01s0026g01910
I
0.786
Eucgr.B03417
Eucalyptus grandis
Eucgr.B03417
I
0.785
Ca_18779
Cicer arietinum
Ca_18779
I
0.780
PK05123.1
Cannabis sativa
PK05123.1
I
0.780
POPTR_0008s14790
Populus trichocarpa
POPTR_0008s14790
I
0.780
MTR_5g038910
Medicago truncatula
MTR_5g038910
I
0.780
GLYMA01G05190
Glycine max
GLYMA01G05190
I
0.780
GLYMA02G02310
Glycine max
GLYMA02G02310
I
0.780
SapurV1A.0200s0020
Salix purpurea
SapurV1A.0200s0020
I
0.780
mgf009409m
Mimulus guttatus
mgf009409m
I
0.778
Lus10030494.g
Linum usitatissimum
Lus10030494.g
I
0.778
Lus10012847.g
Linum usitatissimum
Lus10012847.g
I
0.778
Cla010333
Citrullus lanatus
Cla010333
I
0.776
Cucsa.285270
Cucumis sativus
Cucsa.285270
I
0.776
orange1.1g044977m.g
Citrus sinensis
orange1.1g044977m.g
I
0.774
Ciclev10031405m.g
Citrus clementina
Ciclev10031405m.g
I
0.774
MTR_8g468380
Medicago truncatula
MTR_8g468380
I
0.770
Solyc05g007160.2
Solanum lycopersicum
Solyc05g007160.2
I
0.766
PGSC0003DMG400025612
Solanum tuberosum
PGSC0003DMG400025612
I
0.766
MDP0000210970
Malus domestica
MDP0000210970
I
0.765
Eucgr.G02522
Eucalyptus grandis
Eucgr.G02522
I
0.754
GLYMA18G16040
Glycine max
GLYMA18G16040
I
0.742
Aquca_002_00543
Aquilegia coerulea
Aquca_002_00543
I
0.735
OS07G0627300
Oryza sativa
OS07G0627300
I
0.719
ORUFI07G24080
Oryza rufipogon
ORUFI07G24080
I
0.719
ORGLA07G0179200
Oryza glaberrima
ORGLA07G0179200
I
0.719
PDK_20s1473891g001
Phoenix dactylifera
PDK_20s1473891g001
I
0.719
OBART07G22930
Oryza barthii
OBART07G22930
I
0.719
OGLUM07G22980
Oryza glumaepatula
OGLUM07G22980
I
0.719
BGIOSGA026188
Oryza indica
BGIOSGA026188
I
0.719
OB07G28520
Oryza brachyantha
OB07G28520
I
0.714
GRMZM2G064630
Zea mays
GRMZM2G064630
I
0.710
OPUNC07G21540
Oryza punctata
OPUNC07G21540
I
0.710
Sb02g040050
Sorghum bicolor
Sb02g040050
I
0.710
Solyc04g005710.1
Solanum lycopersicum
Solyc04g005710.1
I
0.706
GSMUA_Achr10G18880_001
Musa acuminata
GSMUA_Achr10G18880_001
I
0.704
Si029124m.g
Setaria italica
Si029124m.g
I
0.688
PGSC0003DMG400002828
Solanum tuberosum
PGSC0003DMG400002828
I
0.688
PGSC0003DMG400026758
Solanum tuberosum
PGSC0003DMG400026758
I
0.688
Pavir.J36475
Panicum virgatum
Pavir.J36475
I
0.678
LPERR07G19800
Leersia perrieri
LPERR07G19800
I
0.671