Bra025652 (Brassica rapa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Bra025652 T267991_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
MYB105
M07031_2.00
Arabidopsis thaliana
TAACGGTWWHDDW

WHHDWWACCGTTA
Dap-seq
OMalley et al.(2016)
MYB105_col_a
0.688 0.717
MYB105
M07032_2.00
Arabidopsis thaliana
NNDWHDHTAACGGWWWH

DWWWCCGTTADHDWHNN
Dap-seq
OMalley et al.(2016)
MYB105_colamp_a
0.688 0.717
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra025652.1-P Myb 16 62
Bra025652.1-P Myb 68 112

Links

Other Myb/SANT family TFs
Other Brassica rapa TFs

55 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Thhalv10028155m.g Eutrema salsugineum Thhalv10028155m.g I 0.755
cassava45348.m1 Manihot esculenta cassava45348.m1 I 0.713
GSMUA_Achr7G21740_001 Musa acuminata GSMUA_Achr7G21740_001 I 0.692
Cagra.0820s0004 Capsella grandiflora Cagra.0820s0004 I 0.691
Carubv10021327m.g Capsella rubella Carubv10021327m.g I 0.691
Bra004394 Brassica rapa Bra004394 I 0.688
Bostr.10273s0409 Boechera stricta Bostr.10273s0409 I 0.688
MYB105 Arabidopsis thaliana AT1G69560 D 0.688
MYB105 Arabidopsis lyrata fgenesh2_kg.2__1220__AT1G69560.1 I 0.688
TCM_033560 Theobroma cacao TCM_033560 I 0.688
Cla000326 Citrullus lanatus Cla000326 I 0.687
Eucgr.K02297 Eucalyptus grandis Eucgr.K02297 I 0.686
Gorai.006G015200 Gossypium raimondii Gorai.006G015200 I 0.686
Pavir.J04678 Panicum virgatum Pavir.J04678 I 0.683
Solyc04g064540.2 Solanum lycopersicum Solyc04g064540.2 I 0.682
GSMUA_Achr6G32250_001 Musa acuminata GSMUA_Achr6G32250_001 I 0.681
Pavir.J31094 Panicum virgatum Pavir.J31094 I 0.678
28838.m000246 Ricinus communis 28838.m000246 I 0.677
cassava12378.valid.m1 Manihot esculenta cassava12378.valid.m1 I 0.673
POPTR_0017s12140 Populus trichocarpa POPTR_0017s12140 I 0.672
MDP0000232291 Malus domestica MDP0000232291 I 0.672
MDP0000172476 Malus domestica MDP0000172476 I 0.672
MDP0000181178 Malus domestica MDP0000181178 I 0.672
MDP0000878006 Malus domestica MDP0000878006 I 0.672
Bo9g159830 Brassica oleracea Bo9g159830 I 0.670
Bra023637 Brassica rapa Bra023637 I 0.670
Ciclev10011967m.g Citrus clementina Ciclev10011967m.g I 0.669
orange1.1g047550m.g Citrus sinensis orange1.1g047550m.g I 0.669
PDK_20s1366461g001 Phoenix dactylifera PDK_20s1366461g001 I 0.668
Bo6g109070 Brassica oleracea Bo6g109070 I 0.668
PGSC0003DMG400028119 Solanum tuberosum PGSC0003DMG400028119 I 0.668
Bostr.10058s0030 Boechera stricta Bostr.10058s0030 N 0.668
Solyc10g081320.1 Solanum lycopersicum Solyc10g081320.1 I 0.668
GSMUA_Achr6G02580_001 Musa acuminata GSMUA_Achr6G02580_001 I 0.667
GSMUA_Achr11G09160_001 Musa acuminata GSMUA_Achr11G09160_001 I 0.667
GSMUA_Achr3G16490_001 Musa acuminata GSMUA_Achr3G16490_001 I 0.666
Si005038m.g Setaria italica Si005038m.g I 0.665
F775_01864 Aegilops tauschii F775_01864 I 0.665
SELMODRAFT_6100 Selaginella moellendorffii SELMODRAFT_6100 I 0.665
SELMODRAFT_6091 Selaginella moellendorffii SELMODRAFT_6091 I 0.665
Si004691m.g Setaria italica Si004691m.g I 0.665
GSMUA_Achr11G10490_001 Musa acuminata GSMUA_Achr11G10490_001 I 0.664
Eucgr.K01542 Eucalyptus grandis Eucgr.K01542 I 0.663
OMERI01G10960 Oryza meridionalis OMERI01G10960 I 0.662
OGLUM01G12520 Oryza glumaepatula OGLUM01G12520 I 0.662
LPERR01G10360 Leersia perrieri LPERR01G10360 I 0.662
ONIVA01G13400 Oryza nivara ONIVA01G13400 I 0.662
ORUFI01G12050 Oryza rufipogon ORUFI01G12050 I 0.662
OS01G0274800 Oryza sativa OS01G0274800 I 0.662
OPUNC01G10870 Oryza punctata OPUNC01G10870 I 0.662
gw1.2.29.1 Physcomitrella patens gw1.2.29.1 I 0.662
Cucsa.016540 Cucumis sativus Cucsa.016540 I 0.662
GSMUA_Achr10G12830_001 Musa acuminata GSMUA_Achr10G12830_001 I 0.661
Gorai.007G002200 Gossypium raimondii Gorai.007G002200 I 0.661
GSMUA_Achr9G04990_001 Musa acuminata GSMUA_Achr9G04990_001 I 0.661