Bra028550 (Brassica rapa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Bra028550 T268019_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB27
M07097_2.00 		Arabidopsis thaliana
HHTACCTAAYTTWWN
NWWAARTTAGGTADD		 Dap-seq
OMalley et al.(2016)
MYB27_col_a 		0.812 0.903
MYB27
M07098_2.00 		Arabidopsis thaliana
NYHTACCTAAYTTWHN
NDWAARTTAGGTADRN		 Dap-seq
OMalley et al.(2016)
MYB27_colamp_a 		0.812 0.903
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra028550.1-P Myb 11 58
Bra028550.1-P Myb 64 109

Links

Other Myb/SANT family TFs
Other Brassica rapa TFs

75 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo6g067190 Brassica oleracea Bo6g067190 I 0.894
Thhalv10010915m.g Eutrema salsugineum Thhalv10010915m.g I 0.844
Bostr.9544s0002 Boechera stricta Bostr.9544s0002 I 0.841
Carubv10019409m.g Capsella rubella Carubv10019409m.g I 0.841
Cagra.0612s0043 Capsella grandiflora Cagra.0612s0043 I 0.841
AtMYB27 Arabidopsis lyrata fgenesh2_kg.5__1687__AT3G53200.1 I 0.831
MYB27 Arabidopsis thaliana AT3G53200 D 0.812
Bo8g082570 Brassica oleracea Bo8g082570 I 0.790
evm.TU.supercontig_92.99 Carica papaya evm.TU.supercontig_92.99 I 0.774
Bra006977 Brassica rapa Bra006977 I 0.773
AtMYB27 Vitis vinifera VIT_08s0007g04830 I 0.745
TCM_022293 Theobroma cacao TCM_022293 I 0.734
PK10274.1 Cannabis sativa PK10274.1 I 0.724
Aquca_030_00038 Aquilegia coerulea Aquca_030_00038 I 0.716
Gorai.009G413600 Gossypium raimondii Gorai.009G413600 I 0.712
AMTR_s01267p00006490 Amborella trichopoda AMTR_s01267p00006490 I 0.702
orange1.1g044161m.g Citrus sinensis orange1.1g044161m.g I 0.700
gene09683-v1.0-hybrid Fragaria vesca gene09683-v1.0-hybrid I 0.695
GSMUA_Achr6G15370_001 Musa acuminata GSMUA_Achr6G15370_001 I 0.692
GSMUA_Achr7G18200_001 Musa acuminata GSMUA_Achr7G18200_001 I 0.691
GSMUA_Achr10G13520_001 Musa acuminata GSMUA_Achr10G13520_001 I 0.691
GSMUA_Achr2G19380_001 Musa acuminata GSMUA_Achr2G19380_001 I 0.691
cassava9891.m1 Manihot esculenta cassava9891.m1 I 0.689
OBART01G45730 Oryza barthii OBART01G45730 I 0.685
OPUNC01G44650 Oryza punctata OPUNC01G44650 I 0.685
OB01G54920 Oryza brachyantha OB01G54920 I 0.685
ORGLA01G0394700 Oryza glaberrima ORGLA01G0394700 I 0.685
ORUFI01G49220 Oryza rufipogon ORUFI01G49220 I 0.685
LPERR01G40120 Leersia perrieri LPERR01G40120 I 0.685
BGIOSGA005283 Oryza indica BGIOSGA005283 I 0.685
orange1.1g047854m.g Citrus sinensis orange1.1g047854m.g I 0.684
POPTR_0004s11720 Populus trichocarpa POPTR_0004s11720 I 0.684
Ciclev10013466m.g Citrus clementina Ciclev10013466m.g I 0.684
TCM_018971 Theobroma cacao TCM_018971 I 0.684
Pm015392 Prunus mume Pm015392 I 0.682
GSMUA_Achr11G24690_001 Musa acuminata GSMUA_Achr11G24690_001 I 0.682
Eucgr.I02057 Eucalyptus grandis Eucgr.I02057 I 0.679
Eucgr.A01648 Eucalyptus grandis Eucgr.A01648 I 0.679
POPTR_0017s13370 Populus trichocarpa POPTR_0017s13370 I 0.679
Solyc02g089190.1 Solanum lycopersicum Solyc02g089190.1 I 0.678
PRUPE_ppa016385mg Prunus persica PRUPE_ppa016385mg I 0.678
BRADI2G62510 Brachypodium distachyon BRADI2G62510 I 0.678
PGSC0003DMG400001376 Solanum tuberosum PGSC0003DMG400001376 I 0.678
GSMUA_Achr5G28350_001 Musa acuminata GSMUA_Achr5G28350_001 I 0.676
GSMUA_Achr8G34340_001 Musa acuminata GSMUA_Achr8G34340_001 I 0.675
BRADI4G04050 Brachypodium distachyon BRADI4G04050 I 0.674
GRMZM2G047626 Zea mays GRMZM2G047626 I 0.674
Pavir.Ca02588 Panicum virgatum Pavir.Ca02588 I 0.674
GRMZM2G130149 Zea mays GRMZM2G130149 I 0.674
BGIOSGA035986 Oryza indica BGIOSGA035986 I 0.674
Si023104m.g Setaria italica Si023104m.g I 0.674
ORGLA12G0141600 Oryza glaberrima ORGLA12G0141600 I 0.674
OB12G23080 Oryza brachyantha OB12G23080 I 0.674
OB11G27690 Oryza brachyantha OB11G27690 I 0.674
LPERR12G13390 Leersia perrieri LPERR12G13390 I 0.674
ORGLA12G0206100 Oryza glaberrima ORGLA12G0206100 I 0.674
Pavir.J11500 Panicum virgatum Pavir.J11500 I 0.674
Sb08g018580 Sorghum bicolor Sb08g018580 I 0.674
ORUFI12G17930 Oryza rufipogon ORUFI12G17930 I 0.674
MYBAS2 Oryza sativa OS12G0567300 I 0.674
GSMUA_Achr8G02640_001 Musa acuminata GSMUA_Achr8G02640_001 I 0.672
Thhalv10005370m.g Eutrema salsugineum Thhalv10005370m.g I 0.671
F775_29427 Aegilops tauschii F775_29427 I 0.670
Traes_3AL_A8AF980F3 Triticum aestivum Traes_3AL_A8AF980F3 I 0.670
TRAES3BF065400010CFD_g Triticum aestivum TRAES3BF065400010CFD_g I 0.670
TRIUR3_22432 Triticum urartu TRIUR3_22432 I 0.670
GSMUA_Achr10G03710_001 Musa acuminata GSMUA_Achr10G03710_001 I 0.670
GSMUA_Achr6G14840_001 Musa acuminata GSMUA_Achr6G14840_001 I 0.667
GSMUA_Achr5G06530_001 Musa acuminata GSMUA_Achr5G06530_001 I 0.667
GSMUA_Achr10G14030_001 Musa acuminata GSMUA_Achr10G14030_001 I 0.667
MDP0000286143 Malus domestica MDP0000286143 I 0.666
TRIUR3_16862 Triticum urartu TRIUR3_16862 I 0.665
MLOC_52439 Hordeum vulgare MLOC_52439 I 0.665
F775_06315 Aegilops tauschii F775_06315 I 0.665
SapurV1A.0589s0170 Salix purpurea SapurV1A.0589s0170 I 0.664