CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
Bra028892
(
Brassica rapa
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00249 (Myb_DNA-binding)
IPR014778
Bra028892
T268026_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AT5G58900
M07146_2.00
Arabidopsis thaliana
HHWWYCTTATCYWHW
WDWRGATAAGRWWDD
Dap-seq
OMalley et al.(2016)
At5g58900_col_a
0.684
0.763
AT5G58900
M07147_2.00
Arabidopsis thaliana
HWYMTTATCHWNWWH
DWWNWDGATAAKRWD
Dap-seq
OMalley et al.(2016)
At5g58900_colamp_a
0.684
0.763
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bra028892.1-P
Myb
19
68
AMWTVEENKLFEKALAVLGDKDDLESWSNIAALIPGKSVDDVIKRYKKLE
Bra028892.1-P
Myb
139
186
GVPWTEEEHRRFLMGLKKYGKGDWRNIARNFVTTRTPTQVASHAQKYF
Links
Other
Myb/SANT
family TFs
Other
Brassica rapa
TFs
24 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy