Bra031847 (Brassica rapa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Bra031847 T268064_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
RAX3
M02700_2.00
Arabidopsis thaliana
SCACCTACCHCCN

NGGDGGTAGGTGS
SELEX
Mathelier et al.(2014)
MA0576.1
0.873 0.935
RAX3
M11043_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ATMYB84_01
0.873 0.935
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra031847.1-P Myb 14 62
Bra031847.1-P Myb 68 113

Links

Other Myb/SANT family TFs
Other Brassica rapa TFs

479 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AC217264.3_FG005 Zea mays AC217264.3_FG005 I 0.000
AMTR_s00037p00177500 Amborella trichopoda AMTR_s00037p00177500 I 0.000
AMTR_s00038p00150140 Amborella trichopoda AMTR_s00038p00150140 I 0.000
Aquca_005_00025 Aquilegia coerulea Aquca_005_00025 I 0.000
MYB97 Arabidopsis thaliana AT4G26930 I 0.000
ATMYB120 Arabidopsis thaliana AT5G55020 I 0.000
GAM1 Oryza indica BGIOSGA004670 I 0.000
BGIOSGA020673 Oryza indica BGIOSGA020673 I 0.000
Bo9g119060 Brassica oleracea Bo9g119060 I 0.000
Bostr.26833s0761 Boechera stricta Bostr.26833s0761 I 0.000
Bra002938 Brassica rapa Bra002938 I 0.000
Bra012038 Brassica rapa Bra012038 I 0.000
BRADI1G32720 Brachypodium distachyon BRADI1G32720 I 0.000
BRADI2G53010 Brachypodium distachyon BRADI2G53010 I 0.000
Cagra.1629s0073 Capsella grandiflora Cagra.1629s0073 I 0.000
Carubv10026070m.g Capsella rubella Carubv10026070m.g I 0.000
cassava40302.m1 Manihot esculenta cassava40302.m1 I 0.000
Ca_20081 Cicer arietinum Ca_20081 I 0.000
chr3.CM0005.370.nc Lotus japonicus chr3.CM0005.370.nc I 0.000
Ciclev10010620m.g Citrus clementina Ciclev10010620m.g I 0.000
Cla005406 Citrullus lanatus Cla005406 I 0.000
Cucsa.060080 Cucumis sativus Cucsa.060080 I 0.000
Eucgr.G03183 Eucalyptus grandis Eucgr.G03183 I 0.000
evm.TU.supercontig_12.292 Carica papaya evm.TU.supercontig_12.292 I 0.000
F775_00954 Aegilops tauschii F775_00954 I 0.000
F775_08967 Aegilops tauschii F775_08967 I 0.000
F775_14392 Aegilops tauschii F775_14392 I 0.000
F775_23034 Aegilops tauschii F775_23034 I 0.000
F775_28392 Aegilops tauschii F775_28392 I 0.000
MYB97 Arabidopsis lyrata fgenesh2_kg.7__1539__AT4G26930.1 I 0.000
GAM1_ORYSI Oryza sativa GAM1_ORYSI D 0.000
gene00431-v1.0-hybrid Fragaria vesca gene00431-v1.0-hybrid I 0.000
gene03321-v1.0-hybrid Fragaria vesca gene03321-v1.0-hybrid I 0.000
gene03323-v1.0-hybrid Fragaria vesca gene03323-v1.0-hybrid I 0.000
GLYMA04G15150 Glycine max GLYMA04G15150 I 0.000
GLYMA06G47000 Glycine max GLYMA06G47000 I 0.000
GLYMA08G42920 Glycine max GLYMA08G42920 I 0.000
GLYMA08G42955 Glycine max GLYMA08G42955 I 0.000
GLYMA13G25716 Glycine max GLYMA13G25716 I 0.000
Gorai.007G312700 Gossypium raimondii Gorai.007G312700 I 0.000
Gorai.013G159200 Gossypium raimondii Gorai.013G159200 I 0.000
GRMZM2G070523 Zea mays GRMZM2G070523 I 0.000
GRMZM2G139688 Zea mays GRMZM2G139688 I 0.000
GRMZM2G161512 Zea mays GRMZM2G161512 N 0.000
GRMZM2G343068 Zea mays GRMZM2G343068 N 0.000
GSMUA_Achr1G17150_001 Musa acuminata GSMUA_Achr1G17150_001 I 0.000
GSMUA_Achr4G23690_001 Musa acuminata GSMUA_Achr4G23690_001 I 0.000
GSMUA_Achr7G00280_001 Musa acuminata GSMUA_Achr7G00280_001 I 0.000
GSMUA_AchrUn_randomG15100_001 Musa acuminata GSMUA_AchrUn_randomG15100_001 I 0.000
LjT02G13.10.nc Lotus japonicus LjT02G13.10.nc I 0.000
LPERR03G20110 Leersia perrieri LPERR03G20110 I 0.000
LPERR06G17110 Leersia perrieri LPERR06G17110 N 0.000
LPERR06G20610 Leersia perrieri LPERR06G20610 I 0.000
Lus10021539.g Linum usitatissimum Lus10021539.g I 0.000
Lus10026787.g Linum usitatissimum Lus10026787.g I 0.000
Lus10027189.g Linum usitatissimum Lus10027189.g I 0.000
Lus10035275.g Linum usitatissimum Lus10035275.g I 0.000
Lus10036103.g Linum usitatissimum Lus10036103.g I 0.000
Lus10040063.g Linum usitatissimum Lus10040063.g I 0.000
MDP0000147309 Malus domestica MDP0000147309 I 0.000
MDP0000151688 Malus domestica MDP0000151688 I 0.000
MDP0000175835 Malus domestica MDP0000175835 I 0.000
MDP0000176798 Malus domestica MDP0000176798 I 0.000
MDP0000179306 Malus domestica MDP0000179306 I 0.000
MDP0000308617 Malus domestica MDP0000308617 I 0.000
mgf002965m Mimulus guttatus mgf002965m I 0.000
mgf010934m Mimulus guttatus mgf010934m I 0.000
mgf019173m Mimulus guttatus mgf019173m I 0.000
mgf020500m Mimulus guttatus mgf020500m I 0.000
MLOC_6041 Hordeum vulgare MLOC_6041 I 0.000
MTR_1g021230 Medicago truncatula MTR_1g021230 I 0.000
MTR_8g042410 Medicago truncatula MTR_8g042410 I 0.000
OB01G43550 Oryza brachyantha OB01G43550 I 0.000
OB03G32840 Oryza brachyantha OB03G32840 I 0.000
OBART01G34660 Oryza barthii OBART01G34660 I 0.000
OBART03G24120 Oryza barthii OBART03G24120 I 0.000
OGLUM01G20920 Oryza glumaepatula OGLUM01G20920 I 0.000
OGLUM03G24880 Oryza glumaepatula OGLUM03G24880 I 0.000
OGLUM06G26120 Oryza glumaepatula OGLUM06G26120 I 0.000
OLONG_019401 Oryza longistaminata OLONG_019401 I 0.000
OLONG_020610 Oryza longistaminata OLONG_020610 I 0.000
OLONG_025057 Oryza longistaminata OLONG_025057 I 0.000
OMERI01G31990 Oryza meridionalis OMERI01G31990 I 0.000
OMERI03G21920 Oryza meridionalis OMERI03G21920 I 0.000
OMERI06G24960 Oryza meridionalis OMERI06G24960 I 0.000
ONIVA04G15310 Oryza nivara ONIVA04G15310 I 0.000
OPUNC03G22220 Oryza punctata OPUNC03G22220 I 0.000
OPUNC06G22490 Oryza punctata OPUNC06G22490 I 0.000
orange1.1g046419m.g Citrus sinensis orange1.1g046419m.g I 0.000
ORGLA03G0224700 Oryza glaberrima ORGLA03G0224700 I 0.000
ORUFI03G24730 Oryza rufipogon ORUFI03G24730 I 0.000
ORUFI06G26670 Oryza rufipogon ORUFI06G26670 I 0.000
GAMYB Oryza sativa OS01G0812000 I 0.000
OS03G0578900 Oryza sativa OS03G0578900 I 0.000
OS06G0679400 Oryza sativa OS06G0679400 I 0.000
Pavir.Da00077 Panicum virgatum Pavir.Da00077 I 0.000
Pavir.Db00593 Panicum virgatum Pavir.Db00593 I 0.000
Pavir.Ea03206 Panicum virgatum Pavir.Ea03206 I 0.000
Pavir.Eb03517 Panicum virgatum Pavir.Eb03517 I 0.000
Pavir.Ib03827 Panicum virgatum Pavir.Ib03827 I 0.000
PGSC0003DMG400013897 Solanum tuberosum PGSC0003DMG400013897 I 0.000
PGSC0003DMG400028949 Solanum tuberosum PGSC0003DMG400028949 I 0.000
Pm015094 Prunus mume Pm015094 I 0.000
Pm016605 Prunus mume Pm016605 I 0.000
PRUPE_ppa003628mg Prunus persica PRUPE_ppa003628mg I 0.000
PRUPE_ppa017451mg Prunus persica PRUPE_ppa017451mg I 0.000
PRUPE_ppa019943mg Prunus persica PRUPE_ppa019943mg I 0.000
PRUPE_ppa022465mg Prunus persica PRUPE_ppa022465mg I 0.000
Gam1 Hordeum vulgare Q96464_HORVU D 0.000
Sb01g015920 Sorghum bicolor Sb01g015920 I 0.000
Sb03g037680 Sorghum bicolor Sb03g037680 I 0.000
Sb10g027280 Sorghum bicolor Sb10g027280 I 0.000
SELMODRAFT_117411 Selaginella moellendorffii SELMODRAFT_117411 I 0.000
SELMODRAFT_127220 Selaginella moellendorffii SELMODRAFT_127220 I 0.000
SELMODRAFT_128781 Selaginella moellendorffii SELMODRAFT_128781 I 0.000
SELMODRAFT_81112 Selaginella moellendorffii SELMODRAFT_81112 I 0.000
SELMODRAFT_84369 Selaginella moellendorffii SELMODRAFT_84369 I 0.000
SELMODRAFT_98669 Selaginella moellendorffii SELMODRAFT_98669 I 0.000
Si000907m.g Setaria italica Si000907m.g I 0.000
Si006555m.g Setaria italica Si006555m.g I 0.000
Si039629m.g Setaria italica Si039629m.g I 0.000
Solyc07g052300.2 Solanum lycopersicum Solyc07g052300.2 I 0.000
Thhalv10013018m.g Eutrema salsugineum Thhalv10013018m.g I 0.000
TRAES3BF027700010CFD_g Triticum aestivum TRAES3BF027700010CFD_g I 0.000
Traes_6AS_5562B97F7 Triticum aestivum Traes_6AS_5562B97F7 I 0.000
Traes_6DS_A0EC5D808 Triticum aestivum Traes_6DS_A0EC5D808 I 0.000
Traes_7AL_0AD4A7A87 Triticum aestivum Traes_7AL_0AD4A7A87 I 0.000
Traes_7DL_FAF2AE9FB Triticum aestivum Traes_7DL_FAF2AE9FB I 0.000
TRIUR3_15006 Triticum urartu TRIUR3_15006 I 0.000
TRIUR3_17146 Triticum urartu TRIUR3_17146 I 0.000
TRIUR3_20797 Triticum urartu TRIUR3_20797 I 0.000
TRIUR3_22706 Triticum urartu TRIUR3_22706 I 0.000
TRIUR3_27104 Triticum urartu TRIUR3_27104 I 0.000
MYB101 Vitis vinifera VIT_12s0059g00700 I 0.000
VIT_13s0067g01630 Vitis vinifera VIT_13s0067g01630 I 0.000