CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bra034565
(
Brassica rapa
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00249 (Myb_DNA-binding)
IPR014778
Bra034565
T268090_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
MYB56
M07130_2.00
Arabidopsis thaliana
DDHNHTAACKGWHWH
DWDWCMGTTADNDHH
Dap-seq
OMalley et al.(2016)
MYB56_col_a
0.730
0.750
MYB56
M07131_2.00
Arabidopsis thaliana
DNNHTAACGGWHWHD
HDWDWCCGTTADNNH
Dap-seq
OMalley et al.(2016)
MYB56_colamp_a
0.730
0.750
MYB52
M00871_2.00
Arabidopsis thaliana
NNNAMCNDNN
NNHNGKTNNN
PBM
Franco-Zorrilla et al.(2014)
MYB52
0.723
0.783
MYB52
M07007_2.00
Arabidopsis thaliana
TAACGGTNHHD
HDDNACCGTTA
Dap-seq
OMalley et al.(2016)
MYB52_col_a
0.723
0.783
MYB105
M07031_2.00
Arabidopsis thaliana
TAACGGTWWHDDW
WHHDWWACCGTTA
Dap-seq
OMalley et al.(2016)
MYB105_col_a
0.677
0.750
MYB105
M07032_2.00
Arabidopsis thaliana
NNDWHDHTAACGGWWWH
DWWWCCGTTADHDWHNN
Dap-seq
OMalley et al.(2016)
MYB105_colamp_a
0.677
0.750
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bra034565.1-P
Myb
19
65
RGHWRPIEDDHLRQLVEQYGPKNWNFIAQHLYGRSGKSCRLRWYNQL
Bra034565.1-P
Myb
71
115
KKPFTEEEEERLLQAHRFQGNRWASIARLFPGRTDNAVKNHFHVI
Links
Other
Myb/SANT
family TFs
Other
Brassica rapa
TFs
365 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy