Bra036035 (Brassica rapa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Bra036035 T268108_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TRB2
M02314_2.00 		Arabidopsis thaliana
WRMCCTAR
YTAGGKYW		 PBM
Weirauch et al.(2014)
pTH7094 		0.664 0.638
TRB2
M01083_2.00 		Arabidopsis thaliana
HRMCCTAR
YTAGGKYD		 PBM
Sullivan et al.(2014)
pTH7260 		0.664 0.638
TRB2
M07157_2.00 		Arabidopsis thaliana
HHHHHNWWRCCCTAAWHHN
NDDWTTAGGGYWWNDDDDD		 Dap-seq
OMalley et al.(2016)
TBP3_col_a 		0.664 0.638
TRB2
M07158_2.00 		Arabidopsis thaliana
HVDHHHNWARCCCTAAHYH
DRDTTAGGGYTWNDDDHBD		 Dap-seq
OMalley et al.(2016)
TBP3_colamp_a 		0.664 0.638
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra036035.1-P Myb 5 57

Links

Other Myb/SANT family TFs
Other Brassica rapa TFs

33 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo8g079140 Brassica oleracea Bo8g079140 N 0.719
Aquca_004_00181 Aquilegia coerulea Aquca_004_00181 I 0.710
SELMODRAFT_426759 Selaginella moellendorffii SELMODRAFT_426759 I 0.698
SELMODRAFT_413266 Selaginella moellendorffii SELMODRAFT_413266 I 0.698
TRB3 Arabidopsis lyrata fgenesh2_kg.5__1337__AT3G49850.1 I 0.682
TRB3 Arabidopsis thaliana AT3G49850 I 0.682
Bostr.6864s0256 Boechera stricta Bostr.6864s0256 I 0.682
Thhalv10010562m.g Eutrema salsugineum Thhalv10010562m.g I 0.682
Carubv10017722m.g Capsella rubella Carubv10017722m.g I 0.682
Cagra.4491s0006 Capsella grandiflora Cagra.4491s0006 I 0.682
SELMODRAFT_49297 Selaginella moellendorffii SELMODRAFT_49297 I 0.675
SELMODRAFT_49296 Selaginella moellendorffii SELMODRAFT_49296 I 0.675
GRMZM2G136887 Zea mays GRMZM2G136887 I 0.672
GRMZM2G087817 Zea mays GRMZM2G087817 I 0.672
Sb03g026470 Sorghum bicolor Sb03g026470 I 0.672
gw1.1.287.1 Physcomitrella patens gw1.1.287.1 I 0.666
gw1.176.27.1 Physcomitrella patens gw1.176.27.1 I 0.666
Carubv10026874m.g Capsella rubella Carubv10026874m.g I 0.664
Bo9g019040 Brassica oleracea Bo9g019040 I 0.664
Bo3g096520 Brassica oleracea Bo3g096520 I 0.664
Thhalv10004691m.g Eutrema salsugineum Thhalv10004691m.g I 0.664
TRB2 Arabidopsis thaliana AT5G67580 D 0.664
Cagra.0342s0046 Capsella grandiflora Cagra.0342s0046 I 0.664
gene05764-v1.0-hybrid Fragaria vesca gene05764-v1.0-hybrid I 0.664
Bostr.0568s0184 Boechera stricta Bostr.0568s0184 I 0.664
Bra037839 Brassica rapa Bra037839 I 0.664
Bra024438 Brassica rapa Bra024438 I 0.664
Bra037837 Brassica rapa Bra037837 I 0.664
TRB2 Arabidopsis lyrata fgenesh1_pm.C_scaffold_8002157 I 0.664
Pavir.J27218 Panicum virgatum Pavir.J27218 I 0.663
Si002403m.g Setaria italica Si002403m.g I 0.663
OB01G30760 Oryza brachyantha OB01G30760 I 0.663
Pavir.Ea02064 Panicum virgatum Pavir.Ea02064 I 0.663