Bra036469 (Brassica rapa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Bra036469 T268116_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PHL1
M02310_2.00 		Arabidopsis thaliana
NWKATNCBNN
NNVGNATMWN		 PBM
Weirauch et al.(2014)
pTH7122 		0.718 0.851
PHL1
M07132_2.00 		Arabidopsis thaliana
MDRGAATATTCBNWN
NWNVGAATATTCYHK		 Dap-seq
OMalley et al.(2016)
At5g29000_col_a 		0.718 0.851
PHR1
M02302_2.00 		Arabidopsis thaliana
NWKATNCBNN
NNVGNATMWN		 PBM
Weirauch et al.(2014)
pTH7249 		0.707 0.851
AT2G20400
M07046_2.00 		Arabidopsis thaliana
NDNNDNHNNVDDDNNNHAWRGMATATTCB
VGAATATKCYWTDNNNHHHBNNDNHNNHN		 Dap-seq
OMalley et al.(2016)
AT2G20400_col_a 		0.695 0.830
AT2G20400
M07047_2.00 		Arabidopsis thaliana
RDRGAATATTCBNWD
HWNVGAATATTCYHY		 Dap-seq
OMalley et al.(2016)
AT2G20400_colamp_a 		0.695 0.830
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra036469.1-P Myb 195 246

Links

Other Myb/SANT family TFs
Other Brassica rapa TFs

108 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo7g003580 Brassica oleracea Bo7g003580 I 0.847
Bra036679 Brassica rapa Bra036679 I 0.836
Bo9g028250 Brassica oleracea Bo9g028250 I 0.836
VIT_07s0005g04120 Vitis vinifera VIT_07s0005g04120 I 0.767
29637.m000753 Ricinus communis 29637.m000753 I 0.767
TCM_003939 Theobroma cacao TCM_003939 I 0.767
MTR_7g098250 Medicago truncatula MTR_7g098250 I 0.767
GLYMA10G04540 Glycine max GLYMA10G04540 I 0.767
GLYMA13G18805 Glycine max GLYMA13G18805 I 0.767
GLYMA19G35080 Glycine max GLYMA19G35080 I 0.767
cassava37547.valid.m1 Manihot esculenta cassava37547.valid.m1 I 0.767
orange1.1g011805m.g Citrus sinensis orange1.1g011805m.g I 0.767
PK01035.1 Cannabis sativa PK01035.1 I 0.767
chr1.CM0295.930.nd Lotus japonicus chr1.CM0295.930.nd I 0.767
MDP0000321461 Malus domestica MDP0000321461 I 0.767
MDP0000285150 Malus domestica MDP0000285150 I 0.767
Ciclev10019956m.g Citrus clementina Ciclev10019956m.g I 0.767
Gorai.007G149100 Gossypium raimondii Gorai.007G149100 I 0.767
GLYMA03G32350 Glycine max GLYMA03G32350 I 0.767
Ca_12255 Cicer arietinum Ca_12255 I 0.767
MTR_1g080330 Medicago truncatula MTR_1g080330 I 0.758
GLYMA19G43690 Glycine max GLYMA19G43690 I 0.758
Ca_03781 Cicer arietinum Ca_03781 I 0.758
LjSGA_026114.1 Lotus japonicus LjSGA_026114.1 I 0.758
Bra036123 Brassica rapa Bra036123 I 0.757
Bo9g010090 Brassica oleracea Bo9g010090 I 0.757
PRUPE_ppa004886mg Prunus persica PRUPE_ppa004886mg I 0.755
Thhalv10002005m.g Eutrema salsugineum Thhalv10002005m.g I 0.750
POPTR_0013s04530 Populus trichocarpa POPTR_0013s04530 I 0.745
cassava31821.valid.m1 Manihot esculenta cassava31821.valid.m1 I 0.745
Bostr.7903s0128 Boechera stricta Bostr.7903s0128 I 0.736
scaffold_304362.1 Arabidopsis lyrata scaffold_304362.1 I 0.736
SapurV1A.0309s0130 Salix purpurea SapurV1A.0309s0130 I 0.734
POPTR_0019s03750 Populus trichocarpa POPTR_0019s03750 I 0.727
Lus10008197.g Linum usitatissimum Lus10008197.g I 0.727
Lus10029607.g Linum usitatissimum Lus10029607.g I 0.727
SapurV1A.0307s0080 Salix purpurea SapurV1A.0307s0080 I 0.727
gene16679-v1.0-hybrid Fragaria vesca gene16679-v1.0-hybrid I 0.724
Pm003600 Prunus mume Pm003600 I 0.724
PRUPE_ppa005708mg Prunus persica PRUPE_ppa005708mg I 0.724
VIT_14s0036g01380 Vitis vinifera VIT_14s0036g01380 I 0.722
Gorai.007G274700 Gossypium raimondii Gorai.007G274700 I 0.721
MTR_7g115530 Medicago truncatula MTR_7g115530 I 0.719
AMTR_s00142p00049490 Amborella trichopoda AMTR_s00142p00049490 I 0.718
Pavir.J39104 Panicum virgatum Pavir.J39104 I 0.718
Lus10024938.g Linum usitatissimum Lus10024938.g I 0.718
Lus10022885.g Linum usitatissimum Lus10022885.g I 0.718
PHL1 Arabidopsis thaliana AT5G29000 D 0.718
Pavir.Ia03429 Panicum virgatum Pavir.Ia03429 I 0.718
Bostr.23151s0001 Boechera stricta Bostr.23151s0001 I 0.718
Si035682m.g Setaria italica Si035682m.g I 0.718
GRMZM2G006477 Zea mays GRMZM2G006477 I 0.718
GSMUA_Achr8G12580_001 Musa acuminata GSMUA_Achr8G12580_001 I 0.718
Sb01g036440 Sorghum bicolor Sb01g036440 I 0.718
PHL1 Arabidopsis lyrata fgenesh2_kg.6__2806__AT5G29000.2 I 0.718
GSMUA_Achr5G12960_001 Musa acuminata GSMUA_Achr5G12960_001 I 0.718
Eucgr.B02155 Eucalyptus grandis Eucgr.B02155 I 0.716
Cagra.1225s0029 Capsella grandiflora Cagra.1225s0029 I 0.707
Thhalv10025330m.g Eutrema salsugineum Thhalv10025330m.g I 0.707
Bo8g054450 Brassica oleracea Bo8g054450 I 0.707
SapurV1A.0252s0390 Salix purpurea SapurV1A.0252s0390 I 0.707
Bostr.7867s0704 Boechera stricta Bostr.7867s0704 I 0.707
evm.TU.supercontig_87.3 Carica papaya evm.TU.supercontig_87.3 I 0.707
Eucgr.A01323 Eucalyptus grandis Eucgr.A01323 I 0.707
Solyc06g008200.2 Solanum lycopersicum Solyc06g008200.2 I 0.707
Solyc09g072830.2 Solanum lycopersicum Solyc09g072830.2 I 0.707
TCM_026171 Theobroma cacao TCM_026171 I 0.707
PHR1 Arabidopsis lyrata fgenesh2_kg.7__1335__AT4G28610.1 I 0.707
Bra010355 Brassica rapa Bra010355 I 0.707
mgf005047m Mimulus guttatus mgf005047m I 0.707
PHR1 Arabidopsis thaliana AT4G28610 D 0.707
Pavir.Bb01566 Panicum virgatum Pavir.Bb01566 I 0.706
Bra020622 Brassica rapa Bra020622 I 0.706
Pavir.Ba02554 Panicum virgatum Pavir.Ba02554 I 0.706
PDK_20s1306081g005 Phoenix dactylifera PDK_20s1306081g005 I 0.706
Bo2g151830 Brassica oleracea Bo2g151830 I 0.706
MDP0000248927 Malus domestica MDP0000248927 I 0.706
fgenesh1_pm.C_scaffold_3000324 Arabidopsis lyrata fgenesh1_pm.C_scaffold_3000324 I 0.706
Sb02g010520 Sorghum bicolor Sb02g010520 I 0.706
GSMUA_Achr11G02560_001 Musa acuminata GSMUA_Achr11G02560_001 I 0.706
Carubv10001064m.g Capsella rubella Carubv10001064m.g I 0.706
Si029945m.g Setaria italica Si029945m.g I 0.706
gene08317-v1.0-hybrid Fragaria vesca gene08317-v1.0-hybrid I 0.706
Lus10032778.g Linum usitatissimum Lus10032778.g I 0.705
GSMUA_Achr4G30200_001 Musa acuminata GSMUA_Achr4G30200_001 I 0.704
GLYMA03G41040 Glycine max GLYMA03G41040 I 0.698
chr1.CM0600.200.nd Lotus japonicus chr1.CM0600.200.nd I 0.698
Bra040196 Brassica rapa Bra040196 I 0.696
Thhalv10020942m.g Eutrema salsugineum Thhalv10020942m.g I 0.696
Bo5g148190 Brassica oleracea Bo5g148190 I 0.696
Carubv10002022m.g Capsella rubella Carubv10002022m.g I 0.696
Cagra.4031s0031 Capsella grandiflora Cagra.4031s0031 I 0.696
AT2G20400 Arabidopsis thaliana AT2G20400 D 0.695
POPTR_0002s25960 Populus trichocarpa POPTR_0002s25960 I 0.695
Carubv10013867m.g Capsella rubella Carubv10013867m.g I 0.688
Bo7g113230 Brassica oleracea Bo7g113230 I 0.685
Thhalv10004351m.g Eutrema salsugineum Thhalv10004351m.g I 0.683
SELMODRAFT_405399 Selaginella moellendorffii SELMODRAFT_405399 I 0.670
SELMODRAFT_447260 Selaginella moellendorffii SELMODRAFT_447260 I 0.670
Gorai.004G023100 Gossypium raimondii Gorai.004G023100 I 0.670
PDK_20s1384631g001 Phoenix dactylifera PDK_20s1384631g001 I 0.670
29680.m001711 Ricinus communis 29680.m001711 I 0.667
Cla003565 Citrullus lanatus Cla003565 I 0.667
Cucsa.027530 Cucumis sativus Cucsa.027530 I 0.667
cassava44101.valid.m1 Manihot esculenta cassava44101.valid.m1 I 0.667
MDP0000132340 Malus domestica MDP0000132340 I 0.664
PK16227.1 Cannabis sativa PK16227.1 I 0.664
GSMUA_Achr2G10180_001 Musa acuminata GSMUA_Achr2G10180_001 I 0.663