Bra036679 (Brassica rapa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Bra036679 T268119_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PHR1
M02302_2.00
Arabidopsis thaliana
NWKATNCBNN

NNVGNATMWN
PBM
Weirauch et al.(2014)
pTH7249
0.720 0.894
PHR1
M02329_2.00
Oryza sativa
NWKATNCBNN

NNVGNATMWN
PBM
Weirauch et al.(2014)
pTH7755
0.671 0.851
PHL1
M02310_2.00
Arabidopsis thaliana
NWKATNCBNN

NNVGNATMWN
PBM
Weirauch et al.(2014)
pTH7122
0.671 0.872
PHL1
M07132_2.00
Arabidopsis thaliana
MDRGAATATTCBNWN

NWNVGAATATTCYHK
Dap-seq
OMalley et al.(2016)
At5g29000_col_a
0.671 0.872
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra036679.1-P Myb 165 216

Links

Other Myb/SANT family TFs
Other Brassica rapa TFs

107 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Bo9g028250 Brassica oleracea Bo9g028250 I 0.909
Bra036469 Brassica rapa Bra036469 I 0.836
Bo7g003580 Brassica oleracea Bo7g003580 I 0.800
GLYMA03G41040 Glycine max GLYMA03G41040 I 0.772
chr1.CM0600.200.nd Lotus japonicus chr1.CM0600.200.nd I 0.772
MDP0000132340 Malus domestica MDP0000132340 I 0.738
MDP0000159434 Malus domestica MDP0000159434 I 0.728
cassava37547.valid.m1 Manihot esculenta cassava37547.valid.m1 I 0.720
mgf005047m Mimulus guttatus mgf005047m I 0.720
Bostr.7867s0704 Boechera stricta Bostr.7867s0704 I 0.720
Cagra.1225s0029 Capsella grandiflora Cagra.1225s0029 I 0.720
29637.m000753 Ricinus communis 29637.m000753 I 0.720
Ciclev10019956m.g Citrus clementina Ciclev10019956m.g I 0.720
TCM_003939 Theobroma cacao TCM_003939 I 0.720
TCM_026171 Theobroma cacao TCM_026171 I 0.720
Ca_12255 Cicer arietinum Ca_12255 I 0.720
Solyc09g072830.2 Solanum lycopersicum Solyc09g072830.2 I 0.720
chr1.CM0295.930.nd Lotus japonicus chr1.CM0295.930.nd I 0.720
MDP0000285150 Malus domestica MDP0000285150 I 0.720
Thhalv10025330m.g Eutrema salsugineum Thhalv10025330m.g I 0.720
MDP0000321461 Malus domestica MDP0000321461 I 0.720
orange1.1g011805m.g Citrus sinensis orange1.1g011805m.g I 0.720
PK01035.1 Cannabis sativa PK01035.1 I 0.720
Solyc06g008200.2 Solanum lycopersicum Solyc06g008200.2 I 0.720
SapurV1A.0252s0390 Salix purpurea SapurV1A.0252s0390 I 0.720
evm.TU.supercontig_87.3 Carica papaya evm.TU.supercontig_87.3 I 0.720
Gorai.007G149100 Gossypium raimondii Gorai.007G149100 I 0.720
Eucgr.A01323 Eucalyptus grandis Eucgr.A01323 I 0.720
VIT_07s0005g04120 Vitis vinifera VIT_07s0005g04120 I 0.720
MTR_7g098250 Medicago truncatula MTR_7g098250 I 0.720
Bo8g054450 Brassica oleracea Bo8g054450 I 0.720
GLYMA19G35080 Glycine max GLYMA19G35080 I 0.720
GLYMA13G18805 Glycine max GLYMA13G18805 I 0.720
GLYMA10G04540 Glycine max GLYMA10G04540 I 0.720
Bra010355 Brassica rapa Bra010355 I 0.720
PHR1 Arabidopsis thaliana AT4G28610 D 0.720
PHR1 Arabidopsis lyrata fgenesh2_kg.7__1335__AT4G28610.1 I 0.720
GLYMA03G32350 Glycine max GLYMA03G32350 I 0.720
MTR_1g080330 Medicago truncatula MTR_1g080330 I 0.712
Ca_03781 Cicer arietinum Ca_03781 I 0.712
LjSGA_026114.1 Lotus japonicus LjSGA_026114.1 I 0.712
GLYMA19G43690 Glycine max GLYMA19G43690 I 0.712
Bo9g010090 Brassica oleracea Bo9g010090 I 0.710
Bra036123 Brassica rapa Bra036123 I 0.710
POPTR_0002s25960 Populus trichocarpa POPTR_0002s25960 I 0.709
PRUPE_ppa004886mg Prunus persica PRUPE_ppa004886mg I 0.709
Cagra.8766s0002 Capsella grandiflora Cagra.8766s0002 I 0.707
Carubv10013614m.g Capsella rubella Carubv10013614m.g I 0.707
Thhalv10002005m.g Eutrema salsugineum Thhalv10002005m.g I 0.704
POPTR_0013s04530 Populus trichocarpa POPTR_0013s04530 I 0.699
cassava31821.valid.m1 Manihot esculenta cassava31821.valid.m1 I 0.698
Bo7g113230 Brassica oleracea Bo7g113230 I 0.698
Bostr.7903s0128 Boechera stricta Bostr.7903s0128 I 0.689
scaffold_304362.1 Arabidopsis lyrata scaffold_304362.1 I 0.689
SapurV1A.0309s0130 Salix purpurea SapurV1A.0309s0130 I 0.687
cassava44101.valid.m1 Manihot esculenta cassava44101.valid.m1 I 0.681
Cucsa.027530 Cucumis sativus Cucsa.027530 I 0.681
29680.m001711 Ricinus communis 29680.m001711 I 0.681
Cla003565 Citrullus lanatus Cla003565 I 0.681
POPTR_0019s03750 Populus trichocarpa POPTR_0019s03750 I 0.681
SapurV1A.0307s0080 Salix purpurea SapurV1A.0307s0080 I 0.681
Lus10008197.g Linum usitatissimum Lus10008197.g I 0.681
Lus10029607.g Linum usitatissimum Lus10029607.g I 0.680
PK16227.1 Cannabis sativa PK16227.1 I 0.678
PRUPE_ppa005708mg Prunus persica PRUPE_ppa005708mg I 0.678
gene16679-v1.0-hybrid Fragaria vesca gene16679-v1.0-hybrid I 0.678
Pm003600 Prunus mume Pm003600 I 0.678
VIT_14s0036g01380 Vitis vinifera VIT_14s0036g01380 I 0.676
Gorai.007G274700 Gossypium raimondii Gorai.007G274700 I 0.674
MTR_7g093010 Medicago truncatula MTR_7g093010 N 0.674
MTR_7g115530 Medicago truncatula MTR_7g115530 I 0.672
PHR1 Oryza indica BGIOSGA012553 I 0.671
PK01823.1 Cannabis sativa PK01823.1 I 0.671
PHL1 Arabidopsis thaliana AT5G29000 D 0.671
Pavir.J39104 Panicum virgatum Pavir.J39104 I 0.671
Lus10022886.g Linum usitatissimum Lus10022886.g I 0.671
Pavir.Ia03429 Panicum virgatum Pavir.Ia03429 I 0.671
Lus10022885.g Linum usitatissimum Lus10022885.g I 0.671
Lus10024938.g Linum usitatissimum Lus10024938.g I 0.671
PHL1 Arabidopsis lyrata fgenesh2_kg.6__2806__AT5G29000.2 I 0.671
GRMZM2G006477 Zea mays GRMZM2G006477 I 0.671
AMTR_s00142p00049490 Amborella trichopoda AMTR_s00142p00049490 I 0.671
LPERR03G14050 Leersia perrieri LPERR03G14050 I 0.671
OPUNC03G15590 Oryza punctata OPUNC03G15590 I 0.671
ORGLA03G0154000 Oryza glaberrima ORGLA03G0154000 I 0.671
Si035682m.g Setaria italica Si035682m.g I 0.671
PHR1 Oryza sativa OS03G0329900 D 0.671
ONIVA03G17050 Oryza nivara ONIVA03G17050 I 0.671
GSMUA_Achr8G12580_001 Musa acuminata GSMUA_Achr8G12580_001 I 0.671
Bostr.23151s0001 Boechera stricta Bostr.23151s0001 I 0.671
OB03G25800 Oryza brachyantha OB03G25800 I 0.671
Aquca_017_00793 Aquilegia coerulea Aquca_017_00793 I 0.671
OLONG_005622 Oryza longistaminata OLONG_005622 I 0.671
GSMUA_Achr5G12960_001 Musa acuminata GSMUA_Achr5G12960_001 I 0.671
OMERI03G14370 Oryza meridionalis OMERI03G14370 I 0.671
Sb01g036440 Sorghum bicolor Sb01g036440 I 0.671
orange1.1g014308m.g Citrus sinensis orange1.1g014308m.g I 0.669
Ciclev10004984m.g Citrus clementina Ciclev10004984m.g I 0.669
Eucgr.B02155 Eucalyptus grandis Eucgr.B02155 I 0.669
Cucsa.037070 Cucumis sativus Cucsa.037070 I 0.662
Cla006047 Citrullus lanatus Cla006047 I 0.662
OB02G43730 Oryza brachyantha OB02G43730 I 0.661
OLONG_010553 Oryza longistaminata OLONG_010553 I 0.661
BGIOSGA005373 Oryza indica BGIOSGA005373 I 0.661
ORUFI02G38560 Oryza rufipogon ORUFI02G38560 I 0.661
TRIUR3_02291 Triticum urartu TRIUR3_02291 I 0.661
Traes_6BL_5D8EE6802 Triticum aestivum Traes_6BL_5D8EE6802 I 0.661