CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bra037045
(
Brassica rapa
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00249 (Myb_DNA-binding)
IPR014778
Bra037045
T268121_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PC-MYB1
M07110_2.00
Arabidopsis thaliana
NDWWNTDRCCGTTRN
NYAACGGYHANWWHN
Dap-seq
OMalley et al.(2016)
MYB3R1_col_a
0.852
0.957
PC-MYB1
M07111_2.00
Arabidopsis thaliana
DWHNTDRCCGTTR
YAACGGYHANDWH
Dap-seq
OMalley et al.(2016)
MYB3R1_colamp_a
0.852
0.957
Q948S5_TOBAC
M11074_2.00
Nicotiana tabacum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MYBA2_01
0.796
0.878
PK12011.1
M01279_2.00
Cannabis sativa
HAACGGHHNN
NNDDCCGTTD
PBM
Lambert et al.(2019)
pTH11423
0.762
0.863
MYB3R4
M07125_2.00
Arabidopsis thaliana
NDWWNTDRCCGTTRN
NYAACGGYHANWWHN
Dap-seq
OMalley et al.(2016)
MYB3R4_col_a
0.742
0.842
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bra037045.1-P
Myb
29
75
KGQWTAEEDEVLCKAVERFQGKNWKKIAECFKDRTDVQCLHRWQKVL
Bra037045.1-P
Myb
81
127
KGPWSKEEDDTIIALVEKYGPKKWSTISQQLPGRIGKQCRERWHNHL
Bra037045.1-P
Myb
133
177
KNAWTQEEELTLIRAHQIYGDKWAELTKFLPGRSDNSIKNHWNSS
Links
Other
Myb/SANT
family TFs
Other
Brassica rapa
TFs
102 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Bo7g115810
Brassica oleracea
Bo7g115810
I
0.867
PC-MYB1
Arabidopsis lyrata
fgenesh2_kg.7__866__AT4G32730.2
I
0.852
PC-MYB1
Arabidopsis thaliana
AT4G32730
D
0.852
Bra034531
Brassica rapa
Bra034531
I
0.838
Bo3g171130
Brassica oleracea
Bo3g171130
I
0.838
Bostr.7867s1124
Boechera stricta
Bostr.7867s1124
I
0.836
29794.m003447
Ricinus communis
29794.m003447
I
0.823
Bo1g010040
Brassica oleracea
Bo1g010040
I
0.822
Bra011376
Brassica rapa
Bra011376
I
0.822
evm.TU.supercontig_78.76
Carica papaya
evm.TU.supercontig_78.76
I
0.810
VIT_11s0016g03750
Vitis vinifera
VIT_11s0016g03750
I
0.801
Carubv10004063m.g
Capsella rubella
Carubv10004063m.g
I
0.797
Cagra.4093s0003
Capsella grandiflora
Cagra.4093s0003
I
0.797
Ca_14925
Cicer arietinum
Ca_14925
I
0.796
Q948S5_TOBAC
Nicotiana tabacum
Q948S5_TOBAC
D
0.796
POPTR_0006s25840
Populus trichocarpa
POPTR_0006s25840
I
0.794
TCM_047091
Theobroma cacao
TCM_047091
I
0.794
SapurV1A.0283s0180
Salix purpurea
SapurV1A.0283s0180
I
0.792
Eucgr.C02893
Eucalyptus grandis
Eucgr.C02893
I
0.792
Cla022565
Citrullus lanatus
Cla022565
I
0.792
Cucsa.161430
Cucumis sativus
Cucsa.161430
I
0.792
MTR_1g026870
Medicago truncatula
MTR_1g026870
I
0.791
Thhalv10024320m.g
Eutrema salsugineum
Thhalv10024320m.g
I
0.790
Solyc08g068320.2
Solanum lycopersicum
Solyc08g068320.2
I
0.790
POPTR_0018s00710
Populus trichocarpa
POPTR_0018s00710
I
0.788
MTR_3g110028
Medicago truncatula
MTR_3g110028
I
0.787
Ciclev10007316m.g
Citrus clementina
Ciclev10007316m.g
I
0.782
MDP0000295807
Malus domestica
MDP0000295807
I
0.781
Gorai.010G110000
Gossypium raimondii
Gorai.010G110000
I
0.779
MDP0000179225
Malus domestica
MDP0000179225
I
0.774
Gorai.009G051000
Gossypium raimondii
Gorai.009G051000
I
0.770
VIT_04s0008g03780
Vitis vinifera
VIT_04s0008g03780
I
0.769
PRUPE_ppa000676mg
Prunus persica
PRUPE_ppa000676mg
I
0.768
GLYMA04G08550
Glycine max
GLYMA04G08550
I
0.766
gene08793-v1.0-hybrid
Fragaria vesca
gene08793-v1.0-hybrid
I
0.766
LjT22I05.60.nd
Lotus japonicus
LjT22I05.60.nd
I
0.766
GLYMA06G08660
Glycine max
GLYMA06G08660
I
0.766
SapurV1A.0446s0220
Salix purpurea
SapurV1A.0446s0220
I
0.764
PK12011.1
Cannabis sativa
PK12011.1
D
0.762
mgf008601m
Mimulus guttatus
mgf008601m
I
0.760
Carubv10000155m.g
Capsella rubella
Carubv10000155m.g
I
0.758
Cagra.7526s0003
Capsella grandiflora
Cagra.7526s0003
I
0.758
Cucsa.311420
Cucumis sativus
Cucsa.311420
I
0.751
Cla023357
Citrullus lanatus
Cla023357
I
0.751
Lus10022136.g
Linum usitatissimum
Lus10022136.g
I
0.750
GSMUA_Achr2G19890_001
Musa acuminata
GSMUA_Achr2G19890_001
I
0.749
Aquca_001_00435
Aquilegia coerulea
Aquca_001_00435
I
0.748
Pm005124
Prunus mume
Pm005124
I
0.748
MYB3R4
Arabidopsis thaliana
AT5G11510
D
0.742
MYB3R-4
Arabidopsis lyrata
fgenesh2_kg.6__1121__AT5G11510.1
I
0.742
Bo9g171130
Brassica oleracea
Bo9g171130
I
0.742
Bostr.20055s0087
Boechera stricta
Bostr.20055s0087
I
0.742
Bra008956
Brassica rapa
Bra008956
I
0.742
GLYMA14G21523
Glycine max
GLYMA14G21523
I
0.736
Ca_01884
Cicer arietinum
Ca_01884
I
0.734
Traes_3AS_09025DA2E
Triticum aestivum
Traes_3AS_09025DA2E
I
0.731
TRAES3BF049800070CFD_g
Triticum aestivum
TRAES3BF049800070CFD_g
I
0.731
Bo3g179620
Brassica oleracea
Bo3g179620
I
0.728
Bo3g007070
Brassica oleracea
Bo3g007070
I
0.728
GLYMA17G26240
Glycine max
GLYMA17G26240
I
0.727
F775_05724
Aegilops tauschii
F775_05724
I
0.723
OPUNC01G07980
Oryza punctata
OPUNC01G07980
I
0.722
OPUNC01G08000
Oryza punctata
OPUNC01G08000
I
0.722
OBART01G08110
Oryza barthii
OBART01G08110
I
0.718
ORGLA12G0066300
Oryza glaberrima
ORGLA12G0066300
I
0.718
OLONG_011886
Oryza longistaminata
OLONG_011886
I
0.718
OS12G0238000
Oryza sativa
OS12G0238000
I
0.718
OB12G16480
Oryza brachyantha
OB12G16480
I
0.718
OGLUM01G09290
Oryza glumaepatula
OGLUM01G09290
I
0.718
ONIVA01G10670
Oryza nivara
ONIVA01G10670
I
0.718
Thhalv10012583m.g
Eutrema salsugineum
Thhalv10012583m.g
I
0.716
PK22174.1
Cannabis sativa
PK22174.1
I
0.713
mgf006384m
Mimulus guttatus
mgf006384m
I
0.713
Pavir.Ea00087
Panicum virgatum
Pavir.Ea00087
I
0.712
Gorai.001G028200
Gossypium raimondii
Gorai.001G028200
I
0.712
Pavir.Eb00149
Panicum virgatum
Pavir.Eb00149
I
0.712
OMERI01G08160
Oryza meridionalis
OMERI01G08160
I
0.711
ORGLA01G0073200
Oryza glaberrima
ORGLA01G0073200
I
0.709
Aquca_013_00366
Aquilegia coerulea
Aquca_013_00366
I
0.709
Traes_1BS_403DBC53C
Triticum aestivum
Traes_1BS_403DBC53C
I
0.708
OB01G18340
Oryza brachyantha
OB01G18340
I
0.707
Bra006102
Brassica rapa
Bra006102
I
0.705
TRIUR3_24658
Triticum urartu
TRIUR3_24658
I
0.703
GSMUA_Achr10G14840_001
Musa acuminata
GSMUA_Achr10G14840_001
I
0.697
MLOC_10556
Hordeum vulgare
MLOC_10556
I
0.696
Traes_1AS_61D017632
Triticum aestivum
Traes_1AS_61D017632
I
0.695
Pavir.J07395
Panicum virgatum
Pavir.J07395
I
0.690
PDK_20s1371143g001
Phoenix dactylifera
PDK_20s1371143g001
I
0.690
SELMODRAFT_411844
Selaginella moellendorffii
SELMODRAFT_411844
I
0.687
OGLUM01G40780
Oryza glumaepatula
OGLUM01G40780
I
0.686
MYB3R-2
Oryza sativa
OS01G0841500
I
0.686
ORGLA01G0306500
Oryza glaberrima
ORGLA01G0306500
I
0.686
e_gw1.36.4.1
Physcomitrella patens
e_gw1.36.4.1
I
0.676
Pm018007
Prunus mume
Pm018007
I
0.673
e_gw1.120.1.1
Physcomitrella patens
e_gw1.120.1.1
I
0.670
Thhalv10020579m.g
Eutrema salsugineum
Thhalv10020579m.g
I
0.669
Pavir.Eb03676
Panicum virgatum
Pavir.Eb03676
I
0.664
Pavir.Ea03349
Panicum virgatum
Pavir.Ea03349
I
0.664
Si000842m.g
Setaria italica
Si000842m.g
I
0.664
AMTR_s00009p00263240
Amborella trichopoda
AMTR_s00009p00263240
I
0.663
chr1.CM0147.520.nd
Lotus japonicus
chr1.CM0147.520.nd
I
0.662
AMTR_s00109p00061950
Amborella trichopoda
AMTR_s00109p00061950
I
0.662