Bra039067 (Brassica rapa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Bra039067 T268138_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
MYB24
M02311_2.00
Arabidopsis thaliana
RCCDAMYNN

NNRKTHGGY
PBM
Weirauch et al.(2014)
pTH8662
0.851 0.968
MYB05_ANTMA
M11067_2.00
Antirrhinum majus Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MYB305_Q3
0.825 0.946
MYB57
M01072_2.00
Arabidopsis thaliana
RCCTAAYT

ARTTAGGY
PBM
Sullivan et al.(2014)
pTH9748
0.742 0.849
MYB57
M07059_2.00
Arabidopsis thaliana
YNTACCTAACTHHH

DDDAGTTAGGTANR
Dap-seq
OMalley et al.(2016)
MYB57_col_a
0.742 0.849
MYB57
M07060_2.00
Arabidopsis thaliana
ACCTAAY

RTTAGGT
Dap-seq
OMalley et al.(2016)
MYB57_colamp_a
0.742 0.849
MYB62
M07027_2.00
Arabidopsis thaliana
NHRCCTAAYTWNHNN

NNDNWARTTAGGYDN
Dap-seq
OMalley et al.(2016)
MYB62_col_a
0.661 0.763
MYB62
M07028_2.00
Arabidopsis thaliana
HNKRCCTAACTHH

DDAGTTAGGYMND
Dap-seq
OMalley et al.(2016)
MYB62_colamp_a
0.661 0.763
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra039067.1-P Myb 22 69
Bra039067.1-P Myb 75 120

Links

Other Myb/SANT family TFs
Other Brassica rapa TFs

146 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
BRADI1G49560 Brachypodium distachyon BRADI1G49560 I 0.000
BRADI1G49570 Brachypodium distachyon BRADI1G49570 I 0.000
BRADI4G35630 Brachypodium distachyon BRADI4G35630 I 0.000
LPERR06G01360 Leersia perrieri LPERR06G01360 N 0.000
GSMUA_Achr7G05900_001 Musa acuminata GSMUA_Achr7G05900_001 I 0.000
GSMUA_Achr4G19660_001 Musa acuminata GSMUA_Achr4G19660_001 I 0.000
DREB1C Oryza indica BGIOSGA022219 N 0.000
OMERI06G01670 Oryza meridionalis OMERI06G01670 N 0.000
ONIVA06G01850 Oryza nivara ONIVA06G01850 N 0.000
OPUNC06G01430 Oryza punctata OPUNC06G01430 N 0.000
ORUFI06G01550 Oryza rufipogon ORUFI06G01550 N 0.000
DREB1C Oryza sativa OS06G0127100 N 0.000
Pavir.J35991 Panicum virgatum Pavir.J35991 N 0.000
Si007199m.g Setaria italica Si007199m.g N 0.000
Sb10g001620 Sorghum bicolor Sb10g001620 N 0.000
GRMZM2G069082 Zea mays GRMZM2G069082 I 0.000
GRMZM2G124037 Zea mays GRMZM2G124037 I 0.000
Q8GZQ2_MAIZE Zea mays Q8GZQ2_MAIZE D 0.000
GRMZM2G380377 Zea mays GRMZM2G380377 N 0.000