Bra039108 (Brassica rapa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Bra039108 T268139_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
MYB57
M01072_2.00
Arabidopsis thaliana
RCCTAAYT

ARTTAGGY
PBM
Sullivan et al.(2014)
pTH9748
0.850 0.946
MYB57
M07059_2.00
Arabidopsis thaliana
YNTACCTAACTHHH

DDDAGTTAGGTANR
Dap-seq
OMalley et al.(2016)
MYB57_col_a
0.850 0.946
MYB57
M07060_2.00
Arabidopsis thaliana
ACCTAAY

RTTAGGT
Dap-seq
OMalley et al.(2016)
MYB57_colamp_a
0.850 0.946
MYB05_ANTMA
M11067_2.00
Antirrhinum majus Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MYB305_Q3
0.782 0.828
MYB24
M02311_2.00
Arabidopsis thaliana
RCCDAMYNN

NNRKTHGGY
PBM
Weirauch et al.(2014)
pTH8662
0.757 0.839
MYB62
M07027_2.00
Arabidopsis thaliana
NHRCCTAAYTWNHNN

NNDNWARTTAGGYDN
Dap-seq
OMalley et al.(2016)
MYB62_col_a
0.690 0.742
MYB62
M07028_2.00
Arabidopsis thaliana
HNKRCCTAACTHH

DDAGTTAGGYMND
Dap-seq
OMalley et al.(2016)
MYB62_colamp_a
0.690 0.742
MYB116
M07014_2.00
Arabidopsis thaliana
NRCCTAAYTWNWNNN

NNNWNWARTTAGGYN
Dap-seq
OMalley et al.(2016)
MYB116_col_a
0.683 0.720
MYB116
M07015_2.00
Arabidopsis thaliana
HNTRCCTAACTHH

DDAGTTAGGYAND
Dap-seq
OMalley et al.(2016)
MYB116_colamp_a
0.683 0.720
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra039108.1-P Myb 25 72
Bra039108.1-P Myb 78 123

Links

Other Myb/SANT family TFs
Other Brassica rapa TFs

Invalid Input OrderBy

248 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action