Bra039650 (Brassica rapa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Bra039650 T268149_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TRB1
M01070_2.00 		Arabidopsis thaliana
WRMCCTAR
YTAGGKYW		 PBM
Sullivan et al.(2014)
pTH7117 		0.863 0.957
OS01G0708000
M02326_2.00 		Oryza sativa
WRMCCTAVNN
NNBTAGGKYW		 PBM
Weirauch et al.(2014)
pTH8716 		0.728 0.804
AT1G72740
M07033_2.00 		Arabidopsis thaliana
HMNAAACCCTAAWYY
RRWTTAGGGTTTNKD		 Dap-seq
OMalley et al.(2016)
AT1G72740_col_a 		0.689 0.696
AT1G72740
M07034_2.00 		Arabidopsis thaliana
HNWAACCCTAAHYHNNNHNNN
NNNDNNNDRDTTAGGGTTWND		 Dap-seq
OMalley et al.(2016)
AT1G72740_colamp_a 		0.689 0.696
PK06103.1
M02348_2.00 		Cannabis sativa
TGCCCTAG
CTAGGGCA		 PBM
Weirauch et al.(2014)
pTH9649 		0.687 0.826
TRB2
M02314_2.00 		Arabidopsis thaliana
WRMCCTAR
YTAGGKYW		 PBM
Weirauch et al.(2014)
pTH7094 		0.686 0.761
TRB2
M01083_2.00 		Arabidopsis thaliana
HRMCCTAR
YTAGGKYD		 PBM
Sullivan et al.(2014)
pTH7260 		0.686 0.761
TRB2
M07157_2.00 		Arabidopsis thaliana
HHHHHNWWRCCCTAAWHHN
NDDWTTAGGGYWWNDDDDD		 Dap-seq
OMalley et al.(2016)
TBP3_col_a 		0.686 0.761
TRB2
M07158_2.00 		Arabidopsis thaliana
HVDHHHNWARCCCTAAHYH
DRDTTAGGGYTWNDDDHBD		 Dap-seq
OMalley et al.(2016)
TBP3_colamp_a 		0.686 0.761
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra039650.1-P Myb 5 56

Links

Other Myb/SANT family TFs
Other Brassica rapa TFs

200 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo5g077530 Brassica oleracea Bo5g077530 I 0.909
Cagra.2826s0004 Capsella grandiflora Cagra.2826s0004 I 0.863
Bostr.26675s0174 Boechera stricta Bostr.26675s0174 I 0.863
Bra018818 Brassica rapa Bra018818 I 0.863
Carubv10009836m.g Capsella rubella Carubv10009836m.g I 0.863
Bo6g018740 Brassica oleracea Bo6g018740 I 0.863
Thhalv10011686m.g Eutrema salsugineum Thhalv10011686m.g I 0.863
TRB1 Arabidopsis lyrata fgenesh2_kg.1__4077__AT1G49950.2 I 0.863
TRB1 Arabidopsis thaliana AT1G49950 D 0.863
AMTR_s00007p00193000 Amborella trichopoda AMTR_s00007p00193000 I 0.817
mgf009594m Mimulus guttatus mgf009594m I 0.811
PGSC0003DMG401025742 Solanum tuberosum PGSC0003DMG401025742 I 0.800
GSMUA_Achr2G13040_001 Musa acuminata GSMUA_Achr2G13040_001 I 0.790
gw1.1.287.1 Physcomitrella patens gw1.1.287.1 I 0.786
gw1.176.27.1 Physcomitrella patens gw1.176.27.1 I 0.786
BRADI2G42240 Brachypodium distachyon BRADI2G42240 I 0.784
Pavir.J27218 Panicum virgatum Pavir.J27218 I 0.784
Pavir.Ea02064 Panicum virgatum Pavir.Ea02064 I 0.784
Si002403m.g Setaria italica Si002403m.g I 0.784
OSTLU_27049 Ostreococcus lucimarinus OSTLU_27049 I 0.776
Traes_3AL_CF481F6AC Triticum aestivum Traes_3AL_CF481F6AC I 0.775
Sb03g026470 Sorghum bicolor Sb03g026470 I 0.775
GRMZM2G136887 Zea mays GRMZM2G136887 I 0.775
TRIUR3_08672 Triticum urartu TRIUR3_08672 I 0.775
GRMZM2G087817 Zea mays GRMZM2G087817 I 0.775
TRAES3BF118300070CFD_g Triticum aestivum TRAES3BF118300070CFD_g I 0.775
EuGene.0000030935 Micromonas pusilla EuGene.0000030935 I 0.771
EuGene.1300010252 Ostreococcus RCC809 EuGene.1300010252 I 0.770
Solyc01g106940.2 Solanum lycopersicum Solyc01g106940.2 I 0.769
PGSC0003DMG400023131 Solanum tuberosum PGSC0003DMG400023131 I 0.769
Solyc11g044320.1 Solanum lycopersicum Solyc11g044320.1 I 0.769
evm.TU.supercontig_25.81 Carica papaya evm.TU.supercontig_25.81 I 0.766
Bra014227 Brassica rapa Bra014227 I 0.764
SELMODRAFT_49296 Selaginella moellendorffii SELMODRAFT_49296 I 0.760
SELMODRAFT_49297 Selaginella moellendorffii SELMODRAFT_49297 I 0.760
Cla012798 Citrullus lanatus Cla012798 I 0.758
evm.TU.supercontig_106.31 Carica papaya evm.TU.supercontig_106.31 I 0.758
cassava34930.m1 Manihot esculenta cassava34930.m1 I 0.758
TCM_029078 Theobroma cacao TCM_029078 I 0.758
Cucsa.341020 Cucumis sativus Cucsa.341020 I 0.758
29706.m001328 Ricinus communis 29706.m001328 I 0.758
PK19870.1 Cannabis sativa PK19870.1 I 0.756
orange1.1g022048m.g Citrus sinensis orange1.1g022048m.g I 0.756
Ciclev10028926m.g Citrus clementina Ciclev10028926m.g I 0.756
GLYMA07G00930 Glycine max GLYMA07G00930 I 0.752
GLYMA08G20270 Glycine max GLYMA08G20270 I 0.752
Thhalv10008387m.g Eutrema salsugineum Thhalv10008387m.g I 0.750
Bostr.7128s0363 Boechera stricta Bostr.7128s0363 I 0.740
Bo3g178250 Brassica oleracea Bo3g178250 I 0.729
OBART01G28260 Oryza barthii OBART01G28260 I 0.728
OB01G37330 Oryza brachyantha OB01G37330 I 0.728
ORGLA01G0233700 Oryza glaberrima ORGLA01G0233700 I 0.728
OPUNC01G28080 Oryza punctata OPUNC01G28080 I 0.728
OGLUM01G32190 Oryza glumaepatula OGLUM01G32190 I 0.728
OMERI05G07460 Oryza meridionalis OMERI05G07460 I 0.728
OLONG_008666 Oryza longistaminata OLONG_008666 I 0.728
ONIVA01G32190 Oryza nivara ONIVA01G32190 I 0.728
PDK_20s1413011g001 Phoenix dactylifera PDK_20s1413011g001 I 0.728
BGIOSGA004300 Oryza indica BGIOSGA004300 I 0.728
ORUFI01G31370 Oryza rufipogon ORUFI01G31370 I 0.728
OS01G0708000 Oryza sativa OS01G0708000 D 0.728
Bostr.10273s0077 Boechera stricta Bostr.10273s0077 I 0.728
SapurV1A.1368s0050 Salix purpurea SapurV1A.1368s0050 I 0.726
POPTR_0014s01010 Populus trichocarpa POPTR_0014s01010 I 0.726
OS12G0613300 Oryza sativa OS12G0613300 I 0.726
ORUFI12G20880 Oryza rufipogon ORUFI12G20880 I 0.726
OPUNC12G16890 Oryza punctata OPUNC12G16890 I 0.726
ORGLA12G0159400 Oryza glaberrima ORGLA12G0159400 I 0.726
ONIVA12G17630 Oryza nivara ONIVA12G17630 I 0.726
OGLUM12G20330 Oryza glumaepatula OGLUM12G20330 I 0.726
OLONG_008332 Oryza longistaminata OLONG_008332 I 0.726
BGIOSGA035841 Oryza indica BGIOSGA035841 I 0.726
OB12G25520 Oryza brachyantha OB12G25520 I 0.726
SapurV1A.0235s0100 Salix purpurea SapurV1A.0235s0100 I 0.726
OBART12G18680 Oryza barthii OBART12G18680 I 0.726
Cucsa.298390 Cucumis sativus Cucsa.298390 I 0.722
29812.m000204 Ricinus communis 29812.m000204 I 0.722
SapurV1A.0019s0460 Salix purpurea SapurV1A.0019s0460 I 0.722
TCM_007242 Theobroma cacao TCM_007242 I 0.722
Aquca_004_00181 Aquilegia coerulea Aquca_004_00181 I 0.722
POPTR_0009s09020 Populus trichocarpa POPTR_0009s09020 I 0.722
TRB1 Vitis vinifera VIT_03s0091g01030 I 0.722
Cla006547 Citrullus lanatus Cla006547 I 0.722
Eucgr.I01053 Eucalyptus grandis Eucgr.I01053 I 0.722
Gorai.005G230800 Gossypium raimondii Gorai.005G230800 I 0.722
Lus10033775.g Linum usitatissimum Lus10033775.g I 0.722
Lus10014653.g Linum usitatissimum Lus10014653.g I 0.722
Bra025967 Brassica rapa Bra025967 I 0.721
Bo5g023860 Brassica oleracea Bo5g023860 I 0.721
GSMUA_Achr6G30000_001 Musa acuminata GSMUA_Achr6G30000_001 I 0.719
Bo6g116150 Brassica oleracea Bo6g116150 I 0.715
SapurV1A.0005s0260 Salix purpurea SapurV1A.0005s0260 I 0.715
PDK_20s1467521g002 Phoenix dactylifera PDK_20s1467521g002 I 0.715
POPTR_0001s30000 Populus trichocarpa POPTR_0001s30000 I 0.715
MTR_5g015340 Medicago truncatula MTR_5g015340 I 0.715
Bra016037 Brassica rapa Bra016037 I 0.715
GSMUA_Achr6G31260_001 Musa acuminata GSMUA_Achr6G31260_001 I 0.713
MTR_2g031870 Medicago truncatula MTR_2g031870 I 0.713
Pm021139 Prunus mume Pm021139 I 0.711
cassava19326.valid.m1 Manihot esculenta cassava19326.valid.m1 I 0.711
PRUPE_ppa011492mg Prunus persica PRUPE_ppa011492mg I 0.711
Bra016598 Brassica rapa Bra016598 I 0.710
Bo8g067280 Brassica oleracea Bo8g067280 I 0.710
scaffold_101953.1 Arabidopsis lyrata scaffold_101953.1 I 0.710
AT1G17520 Arabidopsis thaliana AT1G17520 I 0.710
Carubv10009890m.g Capsella rubella Carubv10009890m.g I 0.710
Cagra.0824s0121 Capsella grandiflora Cagra.0824s0121 I 0.710
orange1.1g023740m.g Citrus sinensis orange1.1g023740m.g I 0.710
Ciclev10026245m.g Citrus clementina Ciclev10026245m.g I 0.710
Bra030992 Brassica rapa Bra030992 I 0.708
AMTR_s00036p00166880 Amborella trichopoda AMTR_s00036p00166880 I 0.707
OMERI12G14000 Oryza meridionalis OMERI12G14000 I 0.705
Bo8g104830 Brassica oleracea Bo8g104830 I 0.700
Gorai.009G143000 Gossypium raimondii Gorai.009G143000 I 0.697
Bo1g081300 Brassica oleracea Bo1g081300 I 0.695
Bra029978 Brassica rapa Bra029978 I 0.695
Bo3g096520 Brassica oleracea Bo3g096520 I 0.695
Bra037837 Brassica rapa Bra037837 I 0.695
Bra037839 Brassica rapa Bra037839 I 0.695
Bo9g019040 Brassica oleracea Bo9g019040 I 0.695
GLYMA09G03390 Glycine max GLYMA09G03390 I 0.695
Carubv10026874m.g Capsella rubella Carubv10026874m.g I 0.695
Bra024438 Brassica rapa Bra024438 I 0.695
GLYMA15G14320 Glycine max GLYMA15G14320 I 0.695
gene25445-v1.0-hybrid Fragaria vesca gene25445-v1.0-hybrid I 0.695
Thhalv10010562m.g Eutrema salsugineum Thhalv10010562m.g I 0.695
Carubv10017722m.g Capsella rubella Carubv10017722m.g I 0.695
TRB3 Arabidopsis thaliana AT3G49850 I 0.695
Thhalv10004691m.g Eutrema salsugineum Thhalv10004691m.g I 0.695
Bostr.0568s0184 Boechera stricta Bostr.0568s0184 I 0.695
Bostr.6864s0256 Boechera stricta Bostr.6864s0256 I 0.695
Cagra.0342s0046 Capsella grandiflora Cagra.0342s0046 I 0.695
Cagra.4491s0006 Capsella grandiflora Cagra.4491s0006 I 0.695
TRB3 Arabidopsis lyrata fgenesh2_kg.5__1337__AT3G49850.1 I 0.695
Ca_08043 Cicer arietinum Ca_08043 I 0.695
VIT_00s1311g00020 Vitis vinifera VIT_00s1311g00020 I 0.694
VIT_07s0151g00480 Vitis vinifera VIT_07s0151g00480 I 0.694
MTR_8g494240 Medicago truncatula MTR_8g494240 I 0.694
SELMODRAFT_443975 Selaginella moellendorffii SELMODRAFT_443975 I 0.690
SELMODRAFT_49312 Selaginella moellendorffii SELMODRAFT_49312 I 0.690
fgenesh2_kg.2__1540__AT1G72740.1 Arabidopsis lyrata fgenesh2_kg.2__1540__AT1G72740.1 I 0.689
Carubv10020636m.g Capsella rubella Carubv10020636m.g I 0.689
AT1G72740 Arabidopsis thaliana AT1G72740 D 0.689
Cagra.1013s0027 Capsella grandiflora Cagra.1013s0027 I 0.689
Pm002374 Prunus mume Pm002374 I 0.687
Lus10019260.g Linum usitatissimum Lus10019260.g I 0.687
29661.m000926 Ricinus communis 29661.m000926 I 0.687
MDP0000239354 Malus domestica MDP0000239354 I 0.687
cassava7508.valid.m1 Manihot esculenta cassava7508.valid.m1 I 0.687
POPTR_0007s14920 Populus trichocarpa POPTR_0007s14920 I 0.687
MDP0000234807 Malus domestica MDP0000234807 I 0.687
PK06103.1 Cannabis sativa PK06103.1 D 0.687
Lus10011546.g Linum usitatissimum Lus10011546.g I 0.687
PRUPE_ppa009220mg Prunus persica PRUPE_ppa009220mg I 0.687
EuGene.0500010080 Micromonas sp RCC299 EuGene.0500010080 I 0.686
TRB2 Arabidopsis thaliana AT5G67580 D 0.686
TRB2 Arabidopsis lyrata fgenesh1_pm.C_scaffold_8002157 I 0.686
MTR_1g041765 Medicago truncatula MTR_1g041765 I 0.683
SELMODRAFT_413266 Selaginella moellendorffii SELMODRAFT_413266 I 0.679
SELMODRAFT_426759 Selaginella moellendorffii SELMODRAFT_426759 I 0.679
gene05764-v1.0-hybrid Fragaria vesca gene05764-v1.0-hybrid I 0.677
GLYMA17G17370 Glycine max GLYMA17G17370 I 0.675
MTR_4g097130 Medicago truncatula MTR_4g097130 I 0.675
Gorai.007G224200 Gossypium raimondii Gorai.007G224200 I 0.675
Gorai.003G030800 Gossypium raimondii Gorai.003G030800 I 0.675
Ciclev10026089m.g Citrus clementina Ciclev10026089m.g I 0.675
TCM_000807 Theobroma cacao TCM_000807 I 0.675
GLYMA11G05070 Glycine max GLYMA11G05070 I 0.675
LjT25P15.150.nd Lotus japonicus LjT25P15.150.nd I 0.675
Ca_02232 Cicer arietinum Ca_02232 I 0.675
Ca_09355 Cicer arietinum Ca_09355 I 0.675
Cla014248 Citrullus lanatus Cla014248 I 0.675
GLYMA01G40220 Glycine max GLYMA01G40220 I 0.675
Cucsa.103240 Cucumis sativus Cucsa.103240 I 0.675
cassava37744.valid.m1 Manihot esculenta cassava37744.valid.m1 I 0.675
GLYMA05G22500 Glycine max GLYMA05G22500 I 0.675
orange1.1g020653m.g Citrus sinensis orange1.1g020653m.g I 0.675
MTR_0095s0040 Medicago truncatula MTR_0095s0040 I 0.673
Si002467m.g Setaria italica Si002467m.g I 0.673
Solyc02g064630.2 Solanum lycopersicum Solyc02g064630.2 I 0.670
PGSC0003DMG402003328 Solanum tuberosum PGSC0003DMG402003328 I 0.670
Traes_5AS_8756ECB5A Triticum aestivum Traes_5AS_8756ECB5A I 0.669
Traes_5DS_3EE830A43 Triticum aestivum Traes_5DS_3EE830A43 I 0.669
PRUPE_ppa016498mg Prunus persica PRUPE_ppa016498mg I 0.669
MLOC_10278 Hordeum vulgare MLOC_10278 I 0.669
BRADI4G01770 Brachypodium distachyon BRADI4G01770 I 0.669
TRIUR3_10613 Triticum urartu TRIUR3_10613 I 0.669
Traes_5BS_EB206B8BC Triticum aestivum Traes_5BS_EB206B8BC I 0.669
Pm013309 Prunus mume Pm013309 I 0.669
gene07496-v1.0-hybrid Fragaria vesca gene07496-v1.0-hybrid I 0.668
mgf004823m Mimulus guttatus mgf004823m I 0.668
GSMUA_Achr4G08670_001 Musa acuminata GSMUA_Achr4G08670_001 I 0.666
PDK_20s1888511g002 Phoenix dactylifera PDK_20s1888511g002 I 0.666
GSMUA_Achr4G09130_001 Musa acuminata GSMUA_Achr4G09130_001 I 0.666
GSMUA_Achr8G24960_001 Musa acuminata GSMUA_Achr8G24960_001 I 0.666
Eucgr.H02312 Eucalyptus grandis Eucgr.H02312 I 0.666
Bra030894 Brassica rapa Bra030894 I 0.662
Lus10012092.g Linum usitatissimum Lus10012092.g I 0.662
Bo3g184590 Brassica oleracea Bo3g184590 I 0.662
Lus10025203.g Linum usitatissimum Lus10025203.g I 0.662