CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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CHLREDRAFT_172919
(
Chlamydomonas reinhardtii
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00249 (Myb_DNA-binding)
IPR014778
CHLREDRAFT_172919
T268702_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
fgenesh1_pg.scaffold_70000111
M02342_2.00
Physcomitrella patens
NNHNATCBN
NVGATNDNN
PBM
Weirauch et al.(2014)
pTH8492
0.671
0.766
KUA1
M02312_2.00
Arabidopsis thaliana
NNTTATCCDN
NHGGATAANN
PBM
Weirauch et al.(2014)
pTH7647
0.661
0.745
KUA1
M07136_2.00
Arabidopsis thaliana
WWHHTTATCCAHWW
WWDTGGATAADDWW
Dap-seq
OMalley et al.(2016)
At5g47390_colamp_a
0.661
0.745
KUA1
M07137_2.00
Arabidopsis thaliana
HHWDYHTTATCCAHW
WDTGGATAADRHWDD
Dap-seq
OMalley et al.(2016)
At5g47390_col_b
0.661
0.745
AT5G61620
M07149_2.00
Arabidopsis thaliana
WWHHTTATCCAHWWN
NWWDTGGATAADDWW
Dap-seq
OMalley et al.(2016)
AT5G61620_col_a
0.661
0.745
AT5G61620
M07150_2.00
Arabidopsis thaliana
YHTTATCCAHW
WDTGGATAADR
Dap-seq
OMalley et al.(2016)
AT5G61620_colamp_a
0.661
0.745
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
EDP03416
Myb
34
81
GQPWSEEEHRAFLAGLKSLGKGSWRQISQQFVPTRTPTQVASHAQKHF
Links
Other
Myb/SANT
family TFs
Other
Chlamydomonas reinhardtii
TFs
180 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy