CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ENSPSIG00000016162
(
Pelodiscus sinensis
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00249 (Myb_DNA-binding)
IPR014778
ENSPSIG00000016162
T269980_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Mybl2
M00807_2.00
Mus musculus
HAACSGHYN
NRDCSGTTD
PBM
Weirauch et al.(2013)
pTH3712
0.821
0.929
MYBL2
M03345_2.00
Homo sapiens
RDMSGTTAACSGTT
AACSGTTAACSKHY
SELEX
Jolma et al.(2013)
MYBL2_1
0.821
0.929
MYBL2
M03346_2.00
Homo sapiens
RCCGTTAVRACCGTTA
TAACGGTYBTAACGGY
SELEX
Jolma et al.(2013)
MYBL2_2
0.821
0.929
MYBL2
M03347_2.00
Homo sapiens
NNRACCGTTWN
NWAACGGTYNN
SELEX
Jolma et al.(2013)
MYBL2_3
0.821
0.929
MYBL2
M03348_2.00
Homo sapiens
RDCCGTTWAACBGHY
RDCVGTTWAACGGHY
SELEX
Jolma et al.(2013)
MYBL2_4
0.821
0.929
MYBL2
M05561_2.00
Homo sapiens
NWAACSGTYDN
NHRACSGTTWN
SELEX
Yin et al.(2017)
MYBL2_eDBD_HT-SELEX
0.821
0.929
MYBL2
M09600_2.00
Homo sapiens
NHAACNGHYN
NRDCNGTTDN
Misc
Heinz et al.(2010)
Hela-BMYB_GSE27030
0.821
0.929
MYBL2
M05562_2.00
Homo sapiens
NHRACSGTYDN
NHRACSGTYDN
SELEX
Yin et al.(2017)
MYBL2_eDBD_Methyl-HT-SELEX
0.821
0.929
Myb
M00179_2.00
Mus musculus
HAACGGHHNN
NNDDCCGTTD
PBM
Badis et al.(2009)
Myb_1047
0.662
0.757
MYB
M08150_2.00
Homo sapiens
NNCAACTGHN
NDCAGTTGNN
ChIP-seq
Mathelier et al.(2014)
MA0100.3
0.662
0.757
MYB
M09260_2.00
Homo sapiens
NYAACKGYYDNH
DNHRRCMGTTRN
Misc
Kulakovskiy et al.(2013)
MYB_HUMAN.H11MO.0.A
0.662
0.757
Myb
M09261_2.00
Mus musculus
NYAACKGHHNBN
NVNDDCMGTTRN
Misc
Kulakovskiy et al.(2013)
MYB_MOUSE.H11MO.0.A
0.662
0.757
Myb
M09601_2.00
Mus musculus
YAACBGYC
GRCVGTTR
Misc
Heinz et al.(2010)
ERMYB-Myb_GSE22095
0.662
0.757
MYB
M11050_2.00
Homo sapiens
CMVNCAACBGYCNBYNBV
BVNRVNGRCVGTTGNBKG
Transfac
Matys et al.(2006)
V$CMYB_01
0.662
0.757
MYB
M11051_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CMYB_Q5
0.662
0.757
MYB
M11052_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$MYB_Q3
0.662
0.757
MYB
M11053_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$MYB_Q4
0.662
0.757
MYB
M11054_2.00
Homo sapiens
VNNAACKDBB
VVHMGTTNNB
Transfac
Matys et al.(2006)
V$MYB_Q6
0.662
0.757
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSPSIP00000018259
Myb
1
34
MLVKQFGQSDWKFLASHFPNRSDQQCQYRWLRVL
ENSPSIP00000018259
Myb
40
86
KGPWTKEEDQKVIELVKKFGTKQWTLIAKYLKGRLGKQCRERWHNHL
ENSPSIP00000018259
Myb
92
137
KSSWTEEEDRIIFEAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTI
ENSPSIP00000018270
Myb
31
77
KVKWTHEEDERLKMLVKQFGQSDWKFLASHFPNRSDQQCQYRWLRVL
ENSPSIP00000018270
Myb
83
129
KGPWTKEEDQKVIELVKKFGTKQWTLIAKYLKGRLGKQCRERWHNHL
ENSPSIP00000018270
Myb
135
180
KSSWTEEEDRIIFEAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTI
Links
Other
Myb/SANT
family TFs
Other
Pelodiscus sinensis
TFs
118 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy