fgenesh1_pg.C_scaffold_2000950 (Arabidopsis lyrata)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 fgenesh1_pg.C_scaffold_2000950 T270670_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
MYB113
M07026_2.00
Arabidopsis thaliana
VTAACKRAHTH

DADTYMGTTAB
Dap-seq
OMalley et al.(2016)
MYB113_col_a
0.796 0.849
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pg.C_scaffold_2000950 Myb 10 57
fgenesh1_pg.C_scaffold_2000950 Myb 63 108

Links

Other Myb/SANT family TFs
Other Arabidopsis lyrata TFs

105 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
MYB113 Arabidopsis thaliana AT1G66370 D 0.796
VIT_14s0006g01340 Vitis vinifera VIT_14s0006g01340 I 0.675
Aquca_015_00088 Aquilegia coerulea Aquca_015_00088 I 0.665
Aquca_047_00006 Aquilegia coerulea Aquca_047_00006 I 0.703
Bostr.26959s0279 Boechera stricta Bostr.26959s0279 I 0.828
Cagra.0463s0006 Capsella grandiflora Cagra.0463s0006 I 0.749
Cagra.0463s0007 Capsella grandiflora Cagra.0463s0007 I 0.789
Cagra.0463s0008 Capsella grandiflora Cagra.0463s0008 I 0.782
Cagra.2400s0001 Capsella grandiflora Cagra.2400s0001 I 0.829
Cagra.2629s0007 Capsella grandiflora Cagra.2629s0007 I 0.814
Carubv10020856m.g Capsella rubella Carubv10020856m.g I 0.829
Carubv10020888m.g Capsella rubella Carubv10020888m.g I 0.841
Ciclev10013455m.g Citrus clementina Ciclev10013455m.g I 0.769
mgf022565m Mimulus guttatus mgf022565m I 0.662
mgf019317m Mimulus guttatus mgf019317m I 0.736
Ca_19630 Cicer arietinum Ca_19630 I 0.682
Ca_22078 Cicer arietinum Ca_22078 I 0.700
Pm025429 Prunus mume Pm025429 I 0.661
Pm029440 Prunus mume Pm029440 I 0.725
Pm029442 Prunus mume Pm029442 I 0.731
Pm029445 Prunus mume Pm029445 I 0.758
Pm031337 Prunus mume Pm031337 I 0.661
27763.m000042 Ricinus communis 27763.m000042 I 0.735
30128.m008730 Ricinus communis 30128.m008730 I 0.685
cassava36364.valid.m1 Manihot esculenta cassava36364.valid.m1 I 0.666
Cucsa.277570 Cucumis sativus Cucsa.277570 I 0.674
Eucgr.F02842 Eucalyptus grandis Eucgr.F02842 I 0.690
Eucgr.H04157 Eucalyptus grandis Eucgr.H04157 I 0.711
Lus10009129.g Linum usitatissimum Lus10009129.g I 0.677
Lus10009130.g Linum usitatissimum Lus10009130.g I 0.703
Lus10028513.g Linum usitatissimum Lus10028513.g I 0.703
Lus10028514.g Linum usitatissimum Lus10028514.g I 0.677
Lus10042522.g Linum usitatissimum Lus10042522.g I 0.718
MDP0000192051 Malus domestica MDP0000192051 I 0.675
SapurV1A.0230s0260 Salix purpurea SapurV1A.0230s0260 I 0.662
Thhalv10019041m.g Eutrema salsugineum Thhalv10019041m.g I 0.846
PK05760.1 Cannabis sativa PK05760.1 I 0.768
PK17827.1 Cannabis sativa PK17827.1 I 0.753
chr1.CM0141.350.nd Lotus japonicus chr1.CM0141.350.nd I 0.690
Gorai.013G118300 Gossypium raimondii Gorai.013G118300 I 0.696
Gorai.007G268800 Gossypium raimondii Gorai.007G268800 I 0.698
Eucgr.J01553 Eucalyptus grandis Eucgr.J01553 I 0.664
Eucgr.J01569 Eucalyptus grandis Eucgr.J01569 I 0.664
Eucgr.J01578 Eucalyptus grandis Eucgr.J01578 I 0.664
Eucgr.J01580 Eucalyptus grandis Eucgr.J01580 I 0.664
evm.TU.contig_42663.2 Carica papaya evm.TU.contig_42663.2 I 0.700
evm.TU.supercontig_116.38 Carica papaya evm.TU.supercontig_116.38 I 0.759
evm.TU.supercontig_2742.1 Carica papaya evm.TU.supercontig_2742.1 I 0.759
gene31413-v1.0-hybrid Fragaria vesca gene31413-v1.0-hybrid I 0.709
Gorai.001G020400 Gossypium raimondii Gorai.001G020400 I 0.663
Gorai.001G087200 Gossypium raimondii Gorai.001G087200 I 0.774
Gorai.001G087400 Gossypium raimondii Gorai.001G087400 I 0.774
chr1.LjT44L17.240.nd Lotus japonicus chr1.LjT44L17.240.nd I 0.682
MYB75 Arabidopsis thaliana AT1G56650 I 0.825
GLYMA18G41520 Glycine max GLYMA18G41520 I 0.682
GLYMA18G49690 Glycine max GLYMA18G49690 I 0.696
MTR_0001s0360 Medicago truncatula MTR_0001s0360 I 0.732
MTR_0197s0010 Medicago truncatula MTR_0197s0010 I 0.682
MTR_0247s0040 Medicago truncatula MTR_0247s0040 I 0.670
MTR_5g078800 Medicago truncatula MTR_5g078800 I 0.733
MTR_5g078860 Medicago truncatula MTR_5g078860 I 0.732
MTR_5g078910 Medicago truncatula MTR_5g078910 I 0.730
MTR_5g078930 Medicago truncatula MTR_5g078930 I 0.685
MTR_5g078950 Medicago truncatula MTR_5g078950 I 0.742
MTR_5g079120 Medicago truncatula MTR_5g079120 I 0.702
GLYMA09G37010 Glycine max GLYMA09G37010 I 0.663
GLYMA09G36966 Glycine max GLYMA09G36966 I 0.709
MYB114 Arabidopsis thaliana AT1G66380 I 0.846
MYB90 Arabidopsis thaliana AT1G66390 I 0.814
Bo00835s060 Brassica oleracea Bo00835s060 I 0.836
Bo6g099880 Brassica oleracea Bo6g099880 I 0.837
Bo6g100940 Brassica oleracea Bo6g100940 I 0.834
Bra001917 Brassica rapa Bra001917 I 0.836
Bra004162 Brassica rapa Bra004162 I 0.834
Bra039763 Brassica rapa Bra039763 I 0.836
PAP1 Arabidopsis lyrata fgenesh2_kg.1__4777__AT1G56650.1 I 0.842
MYB113 Arabidopsis lyrata fgenesh2_kg.2__869__AT1G66370.1 I 0.813
GLYMA07G16980 Glycine max GLYMA07G16980 I 0.678
MTR_5g079220 Medicago truncatula MTR_5g079220 I 0.737
MTR_5g079290 Medicago truncatula MTR_5g079290 I 0.748
Solyc10g086270.1 Solanum lycopersicum Solyc10g086270.1 I 0.778
Solyc10g086290.1 Solanum lycopersicum Solyc10g086290.1 I 0.764
TCM_019192 Theobroma cacao TCM_019192 I 0.765
TCM_026054 Theobroma cacao TCM_026054 I 0.706
VIT_02s0033g00390 Vitis vinifera VIT_02s0033g00390 I 0.768
VIT_02s0033g00400 Vitis vinifera VIT_02s0033g00400 I 0.749
VIT_02s0033g00410 Vitis vinifera VIT_02s0033g00410 I 0.768
VIT_02s0033g00430 Vitis vinifera VIT_02s0033g00430 I 0.719
VIT_02s0033g00450 Vitis vinifera VIT_02s0033g00450 I 0.768
VIT_04s0008g01810 Vitis vinifera VIT_04s0008g01810 I 0.668
VIT_14s0006g01280 Vitis vinifera VIT_14s0006g01280 I 0.703
Solyc10g086260.1 Solanum lycopersicum Solyc10g086260.1 I 0.761
Solyc10g086250.1 Solanum lycopersicum Solyc10g086250.1 I 0.783
MTR_7g017260 Medicago truncatula MTR_7g017260 I 0.700
MTR_8g060940 Medicago truncatula MTR_8g060940 I 0.745
POPTR_0005s14460 Populus trichocarpa POPTR_0005s14460 I 0.662
POPTR_0005s14470 Populus trichocarpa POPTR_0005s14470 I 0.662
PRUPE_ppa010069mg Prunus persica PRUPE_ppa010069mg I 0.664
PRUPE_ppa016711mg Prunus persica PRUPE_ppa016711mg I 0.688
PRUPE_ppa026640mg Prunus persica PRUPE_ppa026640mg I 0.723
scaffold_201356.1 Arabidopsis lyrata scaffold_201356.1 I 0.797
scaffold_201357.1 Arabidopsis lyrata scaffold_201357.1 I 0.824
ATMYB90 Arabidopsis lyrata scaffold_201358.1 I 0.831
Si038905m.g Setaria italica Si038905m.g I 0.663
VIT_14s0006g01290 Vitis vinifera VIT_14s0006g01290 I 0.757