TRFL5 (Arabidopsis lyrata)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 fgenesh2_kg.1__1721__AT1G15720.1 T270726_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TRFL5
M02285_2.00 		Arabidopsis thaliana
WGCCCTAN
NTAGGGCW		 PBM
Weirauch et al.(2014)
pTH7099 		0.845 0.933
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.1__1721__AT1G15720.1 Myb 308 356

Links

Other Myb/SANT family TFs
Other Arabidopsis lyrata TFs

11 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Carubv10011791m.g Capsella rubella Carubv10011791m.g I 0.889
Cagra.2238s0052 Capsella grandiflora Cagra.2238s0052 I 0.889
Bostr.7128s0187 Boechera stricta Bostr.7128s0187 I 0.871
TRFL5 Arabidopsis thaliana AT1G15720 D 0.845
Al_scaffold_0008_2302 Arabidopsis lyrata Al_scaffold_0008_2302 I 0.818
Thhalv10013531m.g Eutrema salsugineum Thhalv10013531m.g I 0.818
AT5G58340 Arabidopsis thaliana AT5G58340 I 0.818
Bo9g134990 Brassica oleracea Bo9g134990 I 0.818
Bra039470 Brassica rapa Bra039470 I 0.787
Bo5g146770 Brassica oleracea Bo5g146770 I 0.787
Thhalv10022421m.g Eutrema salsugineum Thhalv10022421m.g I 0.778