fgenesh2_kg.3__1170__AT3G11280.1 (Arabidopsis lyrata)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 fgenesh2_kg.3__1170__AT3G11280.1 T270759_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AT3G11280
M01075_2.00
Arabidopsis thaliana
NNTTATCNNN

NNNGATAANN
PBM
Sullivan et al.(2014)
pTH7245
0.888 0.979
AT3G11280
M07074_2.00
Arabidopsis thaliana
DWDWDGATAAKRWW

WWYMTTATCHWHWH
Dap-seq
OMalley et al.(2016)
At3g11280_col_a
0.888 0.979
AT3G11280
M07075_2.00
Arabidopsis thaliana
NNWNNDGATAAGRWHDNN

NNHDWYCTTATCHNNWNN
Dap-seq
OMalley et al.(2016)
At3g11280_colamp_a
0.888 0.979
AT5G05790
M07119_2.00
Arabidopsis thaliana
HWYMTTATCHWNWHH

DDWNWDGATAAKRWD
Dap-seq
OMalley et al.(2016)
At5g05790_col_a
0.751 0.926
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.3__1170__AT3G11280.1 Myb 127 174

Links

Other Myb/SANT family TFs
Other Arabidopsis lyrata TFs

61 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Carubv10014411m.g Capsella rubella Carubv10014411m.g I 0.898
Cagra.1655s0043 Capsella grandiflora Cagra.1655s0043 I 0.898
AT3G11280 Arabidopsis thaliana AT3G11280 D 0.888
Bostr.19424s1061 Boechera stricta Bostr.19424s1061 I 0.878
Bra034173 Brassica rapa Bra034173 I 0.873
Thhalv10021322m.g Eutrema salsugineum Thhalv10021322m.g I 0.862
Bo1g141120 Brassica oleracea Bo1g141120 I 0.856
Bo5g136680 Brassica oleracea Bo5g136680 I 0.851
Bra034853 Brassica rapa Bra034853 I 0.851
TCM_042604 Theobroma cacao TCM_042604 I 0.816
POPTR_0008s06450 Populus trichocarpa POPTR_0008s06450 I 0.801
orange1.1g023196m.g Citrus sinensis orange1.1g023196m.g I 0.797
Ciclev10032309m.g Citrus clementina Ciclev10032309m.g I 0.780
evm.TU.supercontig_19.216 Carica papaya evm.TU.supercontig_19.216 I 0.776
Solyc05g052610.2 Solanum lycopersicum Solyc05g052610.2 I 0.770
Gorai.012G075600 Gossypium raimondii Gorai.012G075600 I 0.767
PGSC0003DMG400027126 Solanum tuberosum PGSC0003DMG400027126 I 0.763
cassava26873.m1 Manihot esculenta cassava26873.m1 I 0.758
29610.m000410 Ricinus communis 29610.m000410 I 0.758
cassava1257.valid.m1 Manihot esculenta cassava1257.valid.m1 I 0.758
Bra009134 Brassica rapa Bra009134 I 0.755
Bo9g176900 Brassica oleracea Bo9g176900 I 0.755
PK15104.1 Cannabis sativa PK15104.1 I 0.752
AT5G05790 Arabidopsis thaliana AT5G05790 D 0.751
Bostr.13129s0394 Boechera stricta Bostr.13129s0394 I 0.751
scaffold_600551.1 Arabidopsis lyrata scaffold_600551.1 I 0.751
SapurV1A.0262s0080 Salix purpurea SapurV1A.0262s0080 I 0.747
POPTR_0010s20040 Populus trichocarpa POPTR_0010s20040 I 0.747
SapurV1A.0709s0190 Salix purpurea SapurV1A.0709s0190 I 0.741
evm.TU.supercontig_19.217 Carica papaya evm.TU.supercontig_19.217 I 0.741
Cagra.5131s0007 Capsella grandiflora Cagra.5131s0007 I 0.740
Carubv10001695m.g Capsella rubella Carubv10001695m.g I 0.740
VIT_13s0019g03370 Vitis vinifera VIT_13s0019g03370 I 0.739
Pm018878 Prunus mume Pm018878 I 0.738
PRUPE_ppa018139mg Prunus persica PRUPE_ppa018139mg I 0.738
Lus10009884.g Linum usitatissimum Lus10009884.g I 0.736
Thhalv10014370m.g Eutrema salsugineum Thhalv10014370m.g I 0.735
mgf010347m Mimulus guttatus mgf010347m I 0.734
GLYMA02G42140 Glycine max GLYMA02G42140 I 0.729
GLYMA14G06750 Glycine max GLYMA14G06750 I 0.729
Ca_12513 Cicer arietinum Ca_12513 I 0.729
PGSC0003DMG400020730 Solanum tuberosum PGSC0003DMG400020730 I 0.723
MDP0000277813 Malus domestica MDP0000277813 I 0.720
Cucsa.164580 Cucumis sativus Cucsa.164580 I 0.719
gene20912-v1.0-hybrid Fragaria vesca gene20912-v1.0-hybrid I 0.715
GLYMA18G03430 Glycine max GLYMA18G03430 I 0.710
GLYMA11G34930 Glycine max GLYMA11G34930 I 0.710
Solyc03g096350.2 Solanum lycopersicum Solyc03g096350.2 I 0.709
Lus10014837.g Linum usitatissimum Lus10014837.g I 0.708
Cla004397 Citrullus lanatus Cla004397 I 0.703
MTR_5g081860 Medicago truncatula MTR_5g081860 I 0.702
Lus10028264.g Linum usitatissimum Lus10028264.g I 0.698
MDP0000809640 Malus domestica MDP0000809640 I 0.697
Cla013553 Citrullus lanatus Cla013553 I 0.687
Eucgr.G03029 Eucalyptus grandis Eucgr.G03029 I 0.683
POPTR_0001s25590 Populus trichocarpa POPTR_0001s25590 I 0.679
TCM_041672 Theobroma cacao TCM_041672 I 0.676
Cucsa.139090 Cucumis sativus Cucsa.139090 I 0.676
Ciclev10028910m.g Citrus clementina Ciclev10028910m.g I 0.669
orange1.1g021816m.g Citrus sinensis orange1.1g021816m.g I 0.669
Gorai.009G093700 Gossypium raimondii Gorai.009G093700 I 0.664