fgenesh_masked-pir_contig_142-abinit-gene-0.47 (Pythium irregulare)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 fgenesh_masked-pir_contig_142-abinit-gene-0.47 T270865_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
The protein encoded by this gene is a major apoprotein of the chylomicron. It binds to a specific liver and peripheral cell receptor, and is essential for the normal catabolism of triglyceride-rich lipoprotein constituents. This gene maps to chromosome 19 in a cluster with the related apolipoprotein C1 and C2 genes. Mutations in this gene result in familial dysbetalipoproteinemia, or type III hyperlipoproteinemia (HLP III), in which increased plasma cholesterol and triglycerides are the consequence of impaired clearance of chylomicron and VLDL remnants. [provided by RefSeq, Jun 2016]

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
EPrPI00000016225 Myb 45 90

Links

Other Myb/SANT family TFs
Other Pythium irregulare TFs

19 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
PYU1_G003105 Pythium ultimum PYU1_G003105 N 0.909
maker-piw_contig_3307-fgenesh-gene-0.1 Pythium iwayamai maker-piw_contig_3307-fgenesh-gene-0.1 N 0.870
fgenesh_scip_prom.46568.8839 Phytophthora kernoviae fgenesh_scip_prom.46568.8839 N 0.820
maker-pve_contig_603-snap-gene-0.9 Pythium vexans maker-pve_contig_603-snap-gene-0.9 N 0.812
Physo131313 Phytophthora sojae Physo131313 N 0.812
PITG_19361 Phytophthora infestans PITG_19361 N 0.812
maker-pag1_scaffold_151-fgenesh-gene-0.9 Pythium aphanidermatum maker-pag1_scaffold_151-fgenesh-gene-0.9 N 0.812
Phyra73306 Phytophthora ramorum Phyra73306 N 0.812
maker-par_contig_173-fgenesh-gene-0.4 Pythium arrhenomanes maker-par_contig_173-fgenesh-gene-0.4 N 0.812
F443_03223 Phytophthora parasitica F443_03223 N 0.812
fgenesh_scip_prom.28083.12017 Phytophthora lateralis fgenesh_scip_prom.28083.12017 N 0.812
ALNC14_098180 Albugo laibachii ALNC14_098180 N 0.794
fgenesh1_pg.C_scaffold_26000008 Phytophthora capsici fgenesh1_pg.C_scaffold_26000008 N 0.794
ALNC14_114790 Albugo laibachii ALNC14_114790 N 0.794
maker-pag1_scaffold_151-fgenesh-gene-0.1 Pythium aphanidermatum maker-pag1_scaffold_151-fgenesh-gene-0.1 I 0.689
F443_16339 Phytophthora parasitica F443_16339 N 0.685
maker-pir_contig_548-fgenesh-gene-0.3 Pythium irregulare maker-pir_contig_548-fgenesh-gene-0.3 I 0.681
fgenesh_scip_prom.46568.8840 Phytophthora kernoviae fgenesh_scip_prom.46568.8840 I 0.679
PK06453.1 Cannabis sativa PK06453.1 I 0.671