CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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GRMZM2G016020
(
Zea mays
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00249 (Myb_DNA-binding)
IPR014778
GRMZM2G016020
T271890_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
MYBP_MAIZE
M11057_2.00
Zea mays
ACCWACCHN
NDGGTWGGT
Transfac
Matys et al.(2006)
P$P_01
0.854
1.000
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
GRMZM2G016020_P01
Myb
14
61
RGRWTAEEDQLLANYIAEHGEGSWRSLPKNAGLLRCGKSCRLRWINYL
GRMZM2G016020_P01
Myb
67
88
RGNISKEEEDIIIKLHATLGNR
Links
Other
Myb/SANT
family TFs
Other
Zea mays
TFs
29 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
GRMZM2G129872
Zea mays
GRMZM2G129872
I
0.909
MYBP_MAIZE
Zea mays
MYBP_MAIZE
D
0.854
Pavir.Ia03542
Panicum virgatum
Pavir.Ia03542
I
0.821
BGIOSGA003347
Oryza indica
BGIOSGA003347
I
0.790
cassava34998.m1
Manihot esculenta
cassava34998.m1
I
0.788
GRMZM2G051256
Zea mays
GRMZM2G051256
I
0.782
OLONG_002280
Oryza longistaminata
OLONG_002280
I
0.779
SELMODRAFT_39481
Selaginella moellendorffii
SELMODRAFT_39481
I
0.737
SELMODRAFT_39454
Selaginella moellendorffii
SELMODRAFT_39454
I
0.737
Cagra.0551s0003
Capsella grandiflora
Cagra.0551s0003
I
0.736
30076.m004682
Ricinus communis
30076.m004682
I
0.735
CM0385.290.nd
Lotus japonicus
CM0385.290.nd
I
0.731
LjSGA_102038.1
Lotus japonicus
LjSGA_102038.1
I
0.717
SELMODRAFT_39516
Selaginella moellendorffii
SELMODRAFT_39516
N
0.710
29889.m003258
Ricinus communis
29889.m003258
I
0.710
SELMODRAFT_39507
Selaginella moellendorffii
SELMODRAFT_39507
N
0.710
GRMZM2G112263
Zea mays
GRMZM2G112263
N
0.704
evm.TU.supercontig_18.16
Carica papaya
evm.TU.supercontig_18.16
I
0.700
Pavir.Ea01343
Panicum virgatum
Pavir.Ea01343
I
0.699
mgf024704m
Mimulus guttatus
mgf024704m
N
0.684
GRMZM2G057027
Zea mays
GRMZM2G057027
I
0.677
GRMZM2G084799
Zea mays
GRMZM2G084799
I
0.677
Bra009245
Brassica rapa
Bra009245
N
0.672
Traes_4BL_F7B9CBA99
Triticum aestivum
Traes_4BL_F7B9CBA99
N
0.672
Lus10000008.g
Linum usitatissimum
Lus10000008.g
N
0.670
F775_20860
Aegilops tauschii
F775_20860
I
0.669
OS08G0433400
Oryza sativa
OS08G0433400
N
0.667
29904.m003061
Ricinus communis
29904.m003061
N
0.664
F775_04823
Aegilops tauschii
F775_04823
I
0.663