GSMUA_Achr3G16490_001 (Musa acuminata)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 GSMUA_Achr3G16490_001 T272397_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
MYB52
M00871_2.00
Arabidopsis thaliana
NNNAMCNDNN

NNHNGKTNNN
PBM
Franco-Zorrilla et al.(2014)
MYB52
0.779 0.835
MYB52
M07007_2.00
Arabidopsis thaliana
TAACGGTNHHD

HDDNACCGTTA
Dap-seq
OMalley et al.(2016)
MYB52_col_a
0.779 0.835
MYB56
M07130_2.00
Arabidopsis thaliana
DDHNHTAACKGWHWH

DWDWCMGTTADNDHH
Dap-seq
OMalley et al.(2016)
MYB56_col_a
0.756 0.813
MYB56
M07131_2.00
Arabidopsis thaliana
DNNHTAACGGWHWHD

HDWDWCCGTTADNNH
Dap-seq
OMalley et al.(2016)
MYB56_colamp_a
0.756 0.813
MYB105
M07031_2.00
Arabidopsis thaliana
TAACGGTWWHDDW

WHHDWWACCGTTA
Dap-seq
OMalley et al.(2016)
MYB105_col_a
0.744 0.802
MYB105
M07032_2.00
Arabidopsis thaliana
NNDWHDHTAACGGWWWH

DWWWCCGTTADHDWHNN
Dap-seq
OMalley et al.(2016)
MYB105_colamp_a
0.744 0.802
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GSMUA_Achr3P16490_001 Myb 20 66
GSMUA_Achr3P16490_001 Myb 72 115

Links

Other Myb/SANT family TFs
Other Musa acuminata TFs

385 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ENSXMAG00000003301 Xiphophorus maculatus ENSXMAG00000003301 I 0.000
ENSLOCG00000006468 Lepisosteus oculatus ENSLOCG00000006468 I 0.000
ENSLOCG00000014806 Lepisosteus oculatus ENSLOCG00000014806 I 0.000
ENSOANG00000010450 Ornithorhynchus anatinus ENSOANG00000010450 I 0.000
LotgiG126249 Lottia gigantea LotgiG126249 I 0.000
ENSONIG00000015310 Oreochromis niloticus ENSONIG00000015310 I 0.000
klf13 Oryzias latipes ENSORLG00000007542 I 0.000
ENSPFOG00000004556 Poecilia formosa ENSPFOG00000004556 I 0.000
zgc:153115 Tetraodon nigroviridis ENSTNIG00000007828 I 0.000
klf13 Tetraodon nigroviridis ENSTNIG00000008397 I 0.000
zgc:153115 Takifugu rubripes ENSTRUG00000003801 I 0.000
klf13 Takifugu rubripes ENSTRUG00000011759 I 0.000
ENSLACG00000018298 Latimeria chalumnae ENSLACG00000018298 I 0.000
ENSGMOG00000017987 Gadus morhua ENSGMOG00000017987 I 0.000
Aqu1.219264 Amphimedon queenslandica Aqu1.219264 I 0.000
CapteG131091 Capitella teleta CapteG131091 I 0.000
TC000837 Tribolium castaneum TC000837 I 0.000
ENSAMXG00000000331 Astyanax mexicanus ENSAMXG00000000331 I 0.000
NEMVEDRAFT_v1g39461 Nematostella vectensis NEMVEDRAFT_v1g39461 I 0.000
klf13 Danio rerio ENSDARG00000061368 I 0.000
ENSGACG00000010739 Gasterosteus aculeatus ENSGACG00000010739 I 0.000
zgc:153115 Gasterosteus aculeatus ENSGACG00000016005 I 0.000
ENSGMOG00000002059 Gadus morhua ENSGMOG00000002059 I 0.000
NEMVEDRAFT_v1g19278 Nematostella vectensis NEMVEDRAFT_v1g19278 N 0.000
ENSXMAG00000004532 Xiphophorus maculatus ENSXMAG00000004532 N 0.000
SPU_023727 Strongylocentrotus purpuratus SPU_023727 N 0.000
Aqu1.217685 Amphimedon queenslandica Aqu1.217685 N 0.000
ENSPFOG00000016517 Poecilia formosa ENSPFOG00000016517 N 0.000
ENSONIG00000010668 Oreochromis niloticus ENSONIG00000010668 N 0.000
zgc:153115 Danio rerio ENSDARG00000069342 N 0.000
ENSAMXG00000019220 Astyanax mexicanus ENSAMXG00000019220 N 0.000
DAPPUDRAFT_315814 Daphnia pulex DAPPUDRAFT_315814 N 0.000
CGI_10024271 Crassostrea gigas CGI_10024271 N 0.000
Sakowv30030659m.g Saccoglossus kowalevskii Sakowv30030659m.g N 0.000