CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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GSMUA_Achr5G01180_001
(
Musa acuminata
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00249 (Myb_DNA-binding)
IPR014778
GSMUA_Achr5G01180_001
T272463_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
MYB4
M02303_2.00
Arabidopsis thaliana
YACCWACY
RGTWGGTR
PBM
Weirauch et al.(2014)
pTH7075
0.767
0.828
MYB4
M07115_2.00
Arabidopsis thaliana
NYYACCWAMHWHNDD
HHNDWDKTWGGTRRN
Dap-seq
OMalley et al.(2016)
MYB4_col200_a
0.767
0.828
MYB3
M02288_2.00
Arabidopsis thaliana
NNYACCTACCN
NGGTAGGTRNN
PBM
Weirauch et al.(2014)
pTH7125
0.731
0.806
MYB83
M01073_2.00
Arabidopsis thaliana
YACCHACC
GGTDGGTR
PBM
Sullivan et al.(2014)
pTH7140
0.662
0.634
MYB83
M07066_2.00
Arabidopsis thaliana
YCACCAACHNH
DNDGTTGGTGR
Dap-seq
OMalley et al.(2016)
MYB83_col_a
0.662
0.634
MYB83
M07067_2.00
Arabidopsis thaliana
NCACCWAMCDNHNNN
NNNDNHGKTWGGTGN
Dap-seq
OMalley et al.(2016)
MYB83_colamp_a
0.662
0.634
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
GSMUA_Achr5P01180_001
Myb
14
61
KGTWTKEEDQRLISYVRTHGEGCWRSLPKAAGLLRCGKSCRLRWINYL
GSMUA_Achr5P01180_001
Myb
67
112
RGSFTDEEDELIIKLHGSLGNKWSAIAARLPGRSDNEIKNHWNTNI
Links
Other
Myb/SANT
family TFs
Other
Musa acuminata
TFs
357 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy