CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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GSMUA_Achr5G21090_001
(
Musa acuminata
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00249 (Myb_DNA-binding)
IPR014778
GSMUA_Achr5G21090_001
T272490_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
MYB108
M07065_2.00
Arabidopsis thaliana
RCCWAAYYNNNNHNH
DNDNNNNRRTTWGGY
Dap-seq
OMalley et al.(2016)
BOS1_col_a
0.788
0.871
MYB62
M07027_2.00
Arabidopsis thaliana
NHRCCTAAYTWNHNN
NNDNWARTTAGGYDN
Dap-seq
OMalley et al.(2016)
MYB62_col_a
0.782
0.828
MYB62
M07028_2.00
Arabidopsis thaliana
HNKRCCTAACTHH
DDAGTTAGGYMND
Dap-seq
OMalley et al.(2016)
MYB62_colamp_a
0.782
0.828
MYB05_ANTMA
M11067_2.00
Antirrhinum majus
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MYB305_Q3
0.735
0.860
MYB116
M07014_2.00
Arabidopsis thaliana
NRCCTAAYTWNWNNN
NNNWNWARTTAGGYN
Dap-seq
OMalley et al.(2016)
MYB116_col_a
0.728
0.763
MYB116
M07015_2.00
Arabidopsis thaliana
HNTRCCTAACTHH
DDAGTTAGGYAND
Dap-seq
OMalley et al.(2016)
MYB116_colamp_a
0.728
0.763
MYB24
M02311_2.00
Arabidopsis thaliana
RCCDAMYNN
NNRKTHGGY
PBM
Weirauch et al.(2014)
pTH8662
0.710
0.828
Q2TCH0_PETHY
M11072_2.00
Petunia x hybrida
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$PH4_01
0.709
0.667
MYB57
M01072_2.00
Arabidopsis thaliana
RCCTAAYT
ARTTAGGY
PBM
Sullivan et al.(2014)
pTH9748
0.704
0.763
MYB57
M07059_2.00
Arabidopsis thaliana
YNTACCTAACTHHH
DDDAGTTAGGTANR
Dap-seq
OMalley et al.(2016)
MYB57_col_a
0.704
0.763
MYB57
M07060_2.00
Arabidopsis thaliana
ACCTAAY
RTTAGGT
Dap-seq
OMalley et al.(2016)
MYB57_colamp_a
0.704
0.763
ATMYB121
M07091_2.00
Arabidopsis thaliana
NYNWACCTAMYHHH
DDDRKTAGGTWNRN
Dap-seq
OMalley et al.(2016)
MYB121_col_a
0.662
0.677
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
GSMUA_Achr5P21090_001
Myb
18
65
RGPWTVDEDLILVNYIAVHGEGRWNSLARCAGLKRTGKSCRLRWLNYL
GSMUA_Achr5P21090_001
Myb
71
116
RGNITPEEQLLILELHCRWGNRWSKIAQHLPGRTDNEIKNYWRTRV
Links
Other
Myb/SANT
family TFs
Other
Musa acuminata
TFs
682 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy