CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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GSMUA_Achr9G27510_001
(
Musa acuminata
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00249 (Myb_DNA-binding)
IPR014778
GSMUA_Achr9G27510_001
T272689_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
MYR1
M02309_2.00
Arabidopsis thaliana
NKATNCBNNN
NNNVGNATMN
PBM
Weirauch et al.(2014)
pTH8859
0.744
0.766
MYR2
M02294_2.00
Arabidopsis thaliana
NKATDCBNN
NNVGHATMN
PBM
Weirauch et al.(2014)
pTH7097
0.737
0.745
MYR2
M07063_2.00
Arabidopsis thaliana
NNDAAKATTCYHHN
NDDRGAATMTTHNN
Dap-seq
OMalley et al.(2016)
At3g04030_col_a
0.737
0.745
MYR2
M07064_2.00
Arabidopsis thaliana
VRAAKATTCBHWNNN
NNNWDVGAATMTTYB
Dap-seq
OMalley et al.(2016)
At3g04030_colamp_a
0.737
0.745
UNE16
M01270_2.00
Arabidopsis thaliana
NWKATTCBNN
NNVGAATMWN
PBM
Lambert et al.(2019)
pTH9967
0.730
0.766
AT3G24120
M00729_2.00
Arabidopsis thaliana
NNKATDCBNN
NNVGHATMNN
PBM
Chang et al.(2013)
pTH7086
0.696
0.745
AT3G24120
M07085_2.00
Arabidopsis thaliana
HAKATTCB
VGAATMTD
Dap-seq
OMalley et al.(2016)
At3g24120_col_a
0.696
0.745
AT3G24120
M07086_2.00
Arabidopsis thaliana
NDRAAKATTCBHHN
NDDVGAATMTTYHN
Dap-seq
OMalley et al.(2016)
At3g24120_colamp_a
0.696
0.745
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
GSMUA_Achr9P27510_001
Myb
6
57
RLKWTSQLHQLFVDAVSQLGGVDKATPKYVMRVMGVPGLTLHHLKSHLQKYR
Links
Other
Myb/SANT
family TFs
Other
Musa acuminata
TFs
392 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy