CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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MLOC_5837
(
Hordeum vulgare
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00249 (Myb_DNA-binding)
IPR014778
MLOC_5837
T274523_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PHR1
M02329_2.00
Oryza sativa
NWKATNCBNN
NNVGNATMWN
PBM
Weirauch et al.(2014)
pTH7755
0.714
0.787
PHL6
M02295_2.00
Arabidopsis thaliana
NNWKATNCBN
NVGNATMWNN
PBM
Weirauch et al.(2014)
pTH7071
0.680
0.723
PHL6
M07083_2.00
Arabidopsis thaliana
NDGAAAACH
DGTTTTCHN
Dap-seq
OMalley et al.(2016)
At3g13040_col_b
0.680
0.723
AT2G20400
M07046_2.00
Arabidopsis thaliana
NDNNDNHNNVDDDNNNHAWRGMATATTCB
VGAATATKCYWTDNNNHHHBNNDNHNNHN
Dap-seq
OMalley et al.(2016)
AT2G20400_col_a
0.677
0.766
AT2G20400
M07047_2.00
Arabidopsis thaliana
RDRGAATATTCBNWD
HWNVGAATATTCYHY
Dap-seq
OMalley et al.(2016)
AT2G20400_colamp_a
0.677
0.766
PHL7
M02292_2.00
Arabidopsis thaliana
NWGATDCBNN
NNVGHATCWN
PBM
Weirauch et al.(2014)
pTH7253
0.661
0.745
PK10342.1
M02351_2.00
Cannabis sativa
WAGATKCS
SGMATCTW
PBM
Weirauch et al.(2014)
pTH9489
0.661
0.745
PHL7
M07040_2.00
Arabidopsis thaliana
DRNAKATTCBNHNNN
NNNDNVGAATMTNYH
Dap-seq
OMalley et al.(2016)
At2g01060_colamp_a
0.661
0.745
PHL7
M07041_2.00
Arabidopsis thaliana
VGAATATTCBNHH
DDNVGAATATTCB
Dap-seq
OMalley et al.(2016)
At2g01060_col
0.661
0.745
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
MLOC_5837.1
Myb
231
282
RMRWSLELHERFVEALKKLGGPEKATPKGVLNLMKVEGLTIFHVKSHLQNYR
MLOC_5837.2
Myb
163
214
RMRWSLELHERFVEALKKLGGPEKATPKGVLNLMKVEGLTIFHVKSHLQNYR
MLOC_5837.3
Myb
163
214
RMRWSLELHERFVEALKKLGGPEKATPKGVLNLMKVEGLTIFHVKSHLQNYR
MLOC_5837.4
Myb
163
214
RMRWSLELHERFVEALKKLGGPEKATPKGVLNLMKVEGLTIFHVKSHLQNYR
Links
Other
Myb/SANT
family TFs
Other
Hordeum vulgare
TFs
233 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy