MTR_1g085640 (Medicago truncatula)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 MTR_1g085640 T274707_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
MYB55
M00876_2.00
Arabidopsis thaliana
ACCWAMCD

HGKTWGGT
PBM
Franco-Zorrilla et al.(2014)
MYB55
0.869 0.957
MYB55
M07102_2.00
Arabidopsis thaliana
HNNNHBYAMCWAMCD

HGKTWGKTRVDNNND
Dap-seq
OMalley et al.(2016)
MYB55_colamp_a
0.869 0.957
MYB55
M07103_2.00
Arabidopsis thaliana
NYNYAMCHACCRHH

DDYGGTDGKTRNRN
Dap-seq
OMalley et al.(2016)
MYB55_col
0.869 0.957
MYB61
M07002_2.00
Arabidopsis thaliana
HNYAMCHACCDNHNH

DNDNHGGTDGKTRND
Dap-seq
OMalley et al.(2016)
MYB61_col_a
0.811 0.892
MYB61
M07003_2.00
Arabidopsis thaliana
NHNYACCWAMCDH

DHGKTWGGTRNDN
Dap-seq
OMalley et al.(2016)
MYB61_colamp_a
0.811 0.892
AtMYB17
M07099_2.00
Arabidopsis thaliana
YYYACCWACCWHHHH

DDDDWGGTWGGTRRR
Dap-seq
OMalley et al.(2016)
MYB17_colamp_a
0.684 0.710
MYB83
M01073_2.00
Arabidopsis thaliana
YACCHACC

GGTDGGTR
PBM
Sullivan et al.(2014)
pTH7140
0.682 0.720
MYB83
M07066_2.00
Arabidopsis thaliana
YCACCAACHNH

DNDGTTGGTGR
Dap-seq
OMalley et al.(2016)
MYB83_col_a
0.682 0.720
MYB83
M07067_2.00
Arabidopsis thaliana
NCACCWAMCDNHNNN

NNNDNHGKTWGGTGN
Dap-seq
OMalley et al.(2016)
MYB83_colamp_a
0.682 0.720
MYB92
M07123_2.00
Arabidopsis thaliana
NHHACCTAMY

RKTAGGTDDN
Dap-seq
OMalley et al.(2016)
MYB92_100ng20cy_b
0.671 0.667
MYB92
M07124_2.00
Arabidopsis thaliana
NNNNWNNYYYACCWAMYHH

DDRKTWGGTRRRNNWNNNN
Dap-seq
OMalley et al.(2016)
MYB92_colamp_a
0.671 0.667
MYB107
M07061_2.00
Arabidopsis thaliana
NDDWDBBYYACCWAMYHH

DDRKTWGGTRRVVHWHHN
Dap-seq
OMalley et al.(2016)
MYB107_col_a
0.662 0.677
MYB107
M07062_2.00
Arabidopsis thaliana
WNBYYYACCWAMYH

DRKTWGGTRRRVNW
Dap-seq
OMalley et al.(2016)
MYB107_colamp_a
0.662 0.677
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
KEH43172 Myb 14 61
KEH43172 Myb 67 112

Links

Other Myb/SANT family TFs
Other Medicago truncatula TFs

782 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
F775_17625 Aegilops tauschii F775_17625 N 0.000
BRADI2G52227 Brachypodium distachyon BRADI2G52227 N 0.000
BRADI4G09197 Brachypodium distachyon BRADI4G09197 N 0.000
MLOC_74705 Hordeum vulgare MLOC_74705 N 0.000
LPERR11G20420 Leersia perrieri LPERR11G20420 N 0.000
OBART11G23660 Oryza barthii OBART11G23660 N 0.000
OBART11G23670 Oryza barthii OBART11G23670 N 0.000
OB11G28090 Oryza brachyantha OB11G28090 N 0.000
ORGLA11G0190200 Oryza glaberrima ORGLA11G0190200 N 0.000
ORGLA11G0190300 Oryza glaberrima ORGLA11G0190300 N 0.000
BGIOSGA035742 Oryza indica BGIOSGA035742 N 0.000
ONIVA11G23190 Oryza nivara ONIVA11G23190 N 0.000
OPUNC12G15050 Oryza punctata OPUNC12G15050 N 0.000
ORUFI11G25540 Oryza rufipogon ORUFI11G25540 N 0.000
ORUFI11G25550 Oryza rufipogon ORUFI11G25550 N 0.000
OS11G0705200 Oryza sativa OS11G0705200 N 0.000
Pavir.Hb00044 Panicum virgatum Pavir.Hb00044 N 0.000
Pavir.Ha00317 Panicum virgatum Pavir.Ha00317 N 0.000
Si025985m.g Setaria italica Si025985m.g N 0.000
Sb05g027740 Sorghum bicolor Sb05g027740 N 0.000
Sb08g018940 Sorghum bicolor Sb08g018940 N 0.000
Traes_5DL_E275797CE Triticum aestivum Traes_5DL_E275797CE N 0.000
Traes_4DS_F8FC0C699 Triticum aestivum Traes_4DS_F8FC0C699 N 0.000
Traes_4DS_050789E2A Triticum aestivum Traes_4DS_050789E2A N 0.000
Traes_4BS_A79538646 Triticum aestivum Traes_4BS_A79538646 N 0.000
Traes_4AL_FF199F127 Triticum aestivum Traes_4AL_FF199F127 N 0.000
TRAES3BF026400020CFD_g Triticum aestivum TRAES3BF026400020CFD_g N 0.000
TRIUR3_21532 Triticum urartu TRIUR3_21532 N 0.000
GRMZM2G159475 Zea mays GRMZM2G159475 N 0.000
GRMZM2G163427 Zea mays GRMZM2G163427 N 0.000
GRMZM5G868355 Zea mays GRMZM5G868355 N 0.000