CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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MTR_2g016220
(
Medicago truncatula
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00249 (Myb_DNA-binding)
IPR014778
MTR_2g016220
T274725_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AT2G40260
M07057_2.00
Arabidopsis thaliana
HHWDWAHATTCYHTN
NADRGAATDTWHWDD
Dap-seq
OMalley et al.(2016)
AT2G40260_col_a
0.744
0.851
AT2G40260
M07058_2.00
Arabidopsis thaliana
NNDDWHHNDDWAHATTCYHT
ADRGAATDTWHHNDDWHHNN
Dap-seq
OMalley et al.(2016)
AT2G40260_colamp_a
0.744
0.851
PK26523.1
M01283_2.00
Cannabis sativa
NWHATTCYNN
NNRGAATDWN
PBM
Lambert et al.(2019)
pTH11304
0.738
0.809
AT2G38300
M07056_2.00
Arabidopsis thaliana
WAHATTCYHTH
DADRGAATDTW
Dap-seq
OMalley et al.(2016)
AT2G38300_col_a
0.710
0.766
PHR1
M02329_2.00
Oryza sativa
NWKATNCBNN
NNVGNATMWN
PBM
Weirauch et al.(2014)
pTH7755
0.666
0.733
AT1G14600
M01268_2.00
Arabidopsis thaliana
NWAYATTCYN
NRGAATRTWN
PBM
Lambert et al.(2019)
pTH11557
0.701
0.787
PHL6
M02295_2.00
Arabidopsis thaliana
NNWKATNCBN
NVGNATMWNN
PBM
Weirauch et al.(2014)
pTH7071
0.683
0.681
PHL6
M07083_2.00
Arabidopsis thaliana
NDGAAAACH
DGTTTTCHN
Dap-seq
OMalley et al.(2016)
At3g13040_col_b
0.683
0.681
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
KEH36603
Myb
91
142
RLRWTPELHHSFLHAVERLGGLERATPKLVLQLMSVRGLNIGHVKSHLQMYR
KEH36604
Myb
91
142
RLRWTPELHHSFLHAVERLGGLERATPKLVLQLMSVRGLNIGHVKSHLQMYR
KEH36605
Myb
91
140
RLRWTPELHHSFLHAVERLGGLERATPKLVLQLMSVRGLNIGHVKSHLQF
Links
Other
Myb/SANT
family TFs
Other
Medicago truncatula
TFs
408 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy