MTR_5g027440 (Medicago truncatula)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 MTR_5g027440 T274852_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PHL11
M07134_2.00 		Arabidopsis thaliana
NNRAAKATTCYHHN
NDDRGAATMTTYNN		 Dap-seq
OMalley et al.(2016)
AT5G45580_col_a 		0.851 0.915
PHL11
M07135_2.00 		Arabidopsis thaliana
NRAAKATTCYHHNN
NNDDRGAATMTTYN		 Dap-seq
OMalley et al.(2016)
AT5G45580_colamp_a 		0.851 0.915
PHL12
M01077_2.00 		Arabidopsis thaliana
NWKATTCBNN
NNVGAATMWN		 PBM
Sullivan et al.(2014)
pTH7098 		0.796 0.830
AT3G24120
M00729_2.00 		Arabidopsis thaliana
NNKATDCBNN
NNVGHATMNN		 PBM
Chang et al.(2013)
pTH7086 		0.796 0.830
PHL12
M07079_2.00 		Arabidopsis thaliana
RGAATATTCYYTWN
NWARRGAATATTCY		 Dap-seq
OMalley et al.(2016)
At3g12730_col_a 		0.796 0.830
PHL12
M07080_2.00 		Arabidopsis thaliana
NNRAAKATTCBHHN
NDDVGAATMTTYNN		 Dap-seq
OMalley et al.(2016)
At3g12730_colamp_a 		0.796 0.830
AT3G24120
M07085_2.00 		Arabidopsis thaliana
HAKATTCB
VGAATMTD		 Dap-seq
OMalley et al.(2016)
At3g24120_col_a 		0.796 0.830
AT3G24120
M07086_2.00 		Arabidopsis thaliana
NDRAAKATTCBHHN
NDDVGAATMTTYHN		 Dap-seq
OMalley et al.(2016)
At3g24120_colamp_a 		0.796 0.830
UNE16
M01270_2.00 		Arabidopsis thaliana
NWKATTCBNN
NNVGAATMWN		 PBM
Lambert et al.(2019)
pTH9967 		0.761 0.809
MYR1
M02309_2.00 		Arabidopsis thaliana
NKATNCBNNN
NNNVGNATMN		 PBM
Weirauch et al.(2014)
pTH8859 		0.714 0.745
PHL7
M02292_2.00 		Arabidopsis thaliana
NWGATDCBNN
NNVGHATCWN		 PBM
Weirauch et al.(2014)
pTH7253 		0.711 0.809
PK10342.1
M02351_2.00 		Cannabis sativa
WAGATKCS
SGMATCTW		 PBM
Weirauch et al.(2014)
pTH9489 		0.711 0.809
PHL7
M07040_2.00 		Arabidopsis thaliana
DRNAKATTCBNHNNN
NNNDNVGAATMTNYH		 Dap-seq
OMalley et al.(2016)
At2g01060_colamp_a 		0.711 0.809
PHL7
M07041_2.00 		Arabidopsis thaliana
VGAATATTCBNHH
DDNVGAATATTCB		 Dap-seq
OMalley et al.(2016)
At2g01060_col 		0.711 0.809
MYR2
M02294_2.00 		Arabidopsis thaliana
NKATDCBNN
NNVGHATMN		 PBM
Weirauch et al.(2014)
pTH7097 		0.708 0.723
MYR2
M07063_2.00 		Arabidopsis thaliana
NNDAAKATTCYHHN
NDDRGAATMTTHNN		 Dap-seq
OMalley et al.(2016)
At3g04030_col_a 		0.708 0.723
MYR2
M07064_2.00 		Arabidopsis thaliana
VRAAKATTCBHWNNN
NNNWDVGAATMTTYB		 Dap-seq
OMalley et al.(2016)
At3g04030_colamp_a 		0.708 0.723
PHL6
M02295_2.00 		Arabidopsis thaliana
NNWKATNCBN
NVGNATMWNN		 PBM
Weirauch et al.(2014)
pTH7071 		0.683 0.702
PHL6
M07083_2.00 		Arabidopsis thaliana
NDGAAAACH
DGTTTTCHN		 Dap-seq
OMalley et al.(2016)
At3g13040_col_b 		0.683 0.702
PHR1
M02329_2.00 		Oryza sativa
NWKATNCBNN
NNVGNATMWN		 PBM
Weirauch et al.(2014)
pTH7755 		0.678 0.723
KAN2
M07018_2.00 		Arabidopsis thaliana
HHHNDWATATTCTYH
DRAGAATATWHNDDD		 Dap-seq
OMalley et al.(2016)
KAN2_col_a 		0.670 0.723
KAN2
M07019_2.00 		Arabidopsis thaliana
NWWTATTCYYH
DRRGAATAWWN		 Dap-seq
OMalley et al.(2016)
KAN2_colamp_a 		0.670 0.723
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AES95614 Myb 27 78

Links

Other Myb/SANT family TFs
Other Medicago truncatula TFs

857 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29738.m001050 Ricinus communis 29738.m001050 I 0.000
AMTR_s00007p00238950 Amborella trichopoda AMTR_s00007p00238950 I 0.000
Aquca_002_01106 Aquilegia coerulea Aquca_002_01106 I 0.000
Aquca_026_00225 Aquilegia coerulea Aquca_026_00225 I 0.000
ARF14 Arabidopsis thaliana AT3G25730 D 0.000
BGIOSGA000982 Oryza indica BGIOSGA000982 I 0.000
BGIOSGA002747 Oryza indica BGIOSGA002747 I 0.000
BGIOSGA002748 Oryza indica BGIOSGA002748 I 0.000
BGIOSGA002753 Oryza indica BGIOSGA002753 I 0.000
BGIOSGA020315 Oryza indica BGIOSGA020315 I 0.000
Bo2g061320 Brassica oleracea Bo2g061320 I 0.000
Bo2g138650 Brassica oleracea Bo2g138650 I 0.000
Bo3g138550 Brassica oleracea Bo3g138550 I 0.000
Bo5g015210 Brassica oleracea Bo5g015210 I 0.000
Bo5g043120 Brassica oleracea Bo5g043120 I 0.000
Bostr.0556s0243 Boechera stricta Bostr.0556s0243 I 0.000
Bostr.10273s0485 Boechera stricta Bostr.10273s0485 I 0.000
Bostr.12659s0398 Boechera stricta Bostr.12659s0398 I 0.000
Bostr.13671s0120 Boechera stricta Bostr.13671s0120 I 0.000
Bra011002 Brassica rapa Bra011002 I 0.000
Bra019821 Brassica rapa Bra019821 I 0.000
Bra024735 Brassica rapa Bra024735 I 0.000
Bra026509 Brassica rapa Bra026509 I 0.000
Bra026917 Brassica rapa Bra026917 I 0.000
Bra038346 Brassica rapa Bra038346 I 0.000
BRADI2G02710 Brachypodium distachyon BRADI2G02710 I 0.000
BRADI2G02720 Brachypodium distachyon BRADI2G02720 I 0.000
BRADI2G47220 Brachypodium distachyon BRADI2G47220 I 0.000
Cagra.1157s0007 Capsella grandiflora Cagra.1157s0007 I 0.000
Cagra.3501s0173 Capsella grandiflora Cagra.3501s0173 I 0.000
Carubv10009612m.g Capsella rubella Carubv10009612m.g I 0.000
Carubv10019207m.g Capsella rubella Carubv10019207m.g I 0.000
Carubv10020536m.g Capsella rubella Carubv10020536m.g I 0.000
cassava12324.valid.m1 Manihot esculenta cassava12324.valid.m1 I 0.000
cassava43329.valid.m1 Manihot esculenta cassava43329.valid.m1 I 0.000
Ca_08436 Cicer arietinum Ca_08436 I 0.000
Ca_24123 Cicer arietinum Ca_24123 I 0.000
Ciclev10031846m.g Citrus clementina Ciclev10031846m.g I 0.000
Cla000872 Citrullus lanatus Cla000872 I 0.000
Cla020675 Citrullus lanatus Cla020675 I 0.000
Cucsa.147340 Cucumis sativus Cucsa.147340 I 0.000
Cucsa.283870 Cucumis sativus Cucsa.283870 I 0.000
EDF3 Arabidopsis lyrata fgenesh2_kg.5__327__AT3G25730.1 I 0.000
Eucgr.B03048 Eucalyptus grandis Eucgr.B03048 I 0.000
F775_20035 Aegilops tauschii F775_20035 N 0.000
gene03871-v1.0-hybrid Fragaria vesca gene03871-v1.0-hybrid I 0.000
GLYMA01G22260 Glycine max GLYMA01G22260 I 0.000
GLYMA02G11060 Glycine max GLYMA02G11060 I 0.000
GLYMA10G34760 Glycine max GLYMA10G34760 I 0.000
GLYMA20G32730 Glycine max GLYMA20G32730 I 0.000
Gorai.005G138100 Gossypium raimondii Gorai.005G138100 I 0.000
Gorai.008G185900 Gossypium raimondii Gorai.008G185900 I 0.000
Gorai.013G080000 Gossypium raimondii Gorai.013G080000 I 0.000
GRMZM2G059939 Zea mays GRMZM2G059939 I 0.000
GRMZM2G159592 Zea mays GRMZM2G159592 I 0.000
GRMZM2G169654 Zea mays GRMZM2G169654 I 0.000
GSMUA_Achr1G05400_001 Musa acuminata GSMUA_Achr1G05400_001 I 0.000
GSMUA_Achr1G21250_001 Musa acuminata GSMUA_Achr1G21250_001 I 0.000
GSMUA_Achr2G22560_001 Musa acuminata GSMUA_Achr2G22560_001 I 0.000
GSMUA_Achr3G21100_001 Musa acuminata GSMUA_Achr3G21100_001 I 0.000
GSMUA_Achr4G06710_001 Musa acuminata GSMUA_Achr4G06710_001 I 0.000
GSMUA_Achr5G09950_001 Musa acuminata GSMUA_Achr5G09950_001 I 0.000
GSMUA_Achr6G01420_001 Musa acuminata GSMUA_Achr6G01420_001 I 0.000
GSMUA_AchrUn_randomG06880_001 Musa acuminata GSMUA_AchrUn_randomG06880_001 I 0.000
gw1.135.126.1 Physcomitrella patens gw1.135.126.1 I 0.000
LPERR01G02360 Leersia perrieri LPERR01G02360 I 0.000
LPERR01G02380 Leersia perrieri LPERR01G02380 I 0.000
LPERR01G23470 Leersia perrieri LPERR01G23470 I 0.000
LPERR05G20600 Leersia perrieri LPERR05G20600 I 0.000
Lus10021707.g Linum usitatissimum Lus10021707.g I 0.000
Lus10041487.g Linum usitatissimum Lus10041487.g I 0.000
MDP0000128924 Malus domestica MDP0000128924 I 0.000
MDP0000939633 Malus domestica MDP0000939633 I 0.000
mgf019592m Mimulus guttatus mgf019592m I 0.000
MLOC_5512 Hordeum vulgare MLOC_5512 I 0.000
MLOC_56567 Hordeum vulgare MLOC_56567 I 0.000
MLOC_63261 Hordeum vulgare MLOC_63261 I 0.000
MLOC_7940 Hordeum vulgare MLOC_7940 I 0.000
MTR_1g093600 Medicago truncatula MTR_1g093600 I 0.000
MTR_5g053920 Medicago truncatula MTR_5g053920 I 0.000
OB01G12600 Oryza brachyantha OB01G12600 I 0.000
OBART01G02610 Oryza barthii OBART01G02610 I 0.000
OBART01G27360 Oryza barthii OBART01G27360 I 0.000
OGLUM01G02850 Oryza glumaepatula OGLUM01G02850 I 0.000
OGLUM01G31260 Oryza glumaepatula OGLUM01G31260 I 0.000
OGLUM05G26380 Oryza glumaepatula OGLUM05G26380 I 0.000
OMERI01G02480 Oryza meridionalis OMERI01G02480 I 0.000
OMERI01G02500 Oryza meridionalis OMERI01G02500 I 0.000
OMERI01G25110 Oryza meridionalis OMERI01G25110 I 0.000
OMERI05G22110 Oryza meridionalis OMERI05G22110 I 0.000
ONIVA01G02970 Oryza nivara ONIVA01G02970 I 0.000
ONIVA01G02990 Oryza nivara ONIVA01G02990 I 0.000
ONIVA01G31290 Oryza nivara ONIVA01G31290 I 0.000
ONIVA05G26000 Oryza nivara ONIVA05G26000 I 0.000
OPUNC01G02240 Oryza punctata OPUNC01G02240 I 0.000
OPUNC01G27280 Oryza punctata OPUNC01G27280 I 0.000
OPUNC05G22370 Oryza punctata OPUNC05G22370 I 0.000
orange1.1g017035m.g Citrus sinensis orange1.1g017035m.g I 0.000
orange1.1g021945m.g Citrus sinensis orange1.1g021945m.g I 0.000
ORGLA01G0022400 Oryza glaberrima ORGLA01G0022400 I 0.000
ORGLA01G0022600 Oryza glaberrima ORGLA01G0022600 I 0.000
ORGLA01G0225300 Oryza glaberrima ORGLA01G0225300 I 0.000
ORUFI01G02660 Oryza rufipogon ORUFI01G02660 I 0.000
ORUFI01G02680 Oryza rufipogon ORUFI01G02680 I 0.000
ORUFI01G30390 Oryza rufipogon ORUFI01G30390 I 0.000
OS01G0140700 Oryza sativa OS01G0140700 I 0.000
OS01G0141000 Oryza sativa OS01G0141000 I 0.000
OS01G0693400 Oryza sativa OS01G0693400 I 0.000
OS05G0549800 Oryza sativa OS05G0549800 I 0.000
Pavir.Ca01165 Panicum virgatum Pavir.Ca01165 I 0.000
Pavir.Ca01826 Panicum virgatum Pavir.Ca01826 I 0.000
Pavir.Ea00549 Panicum virgatum Pavir.Ea00549 I 0.000
Pavir.Ea02092 Panicum virgatum Pavir.Ea02092 I 0.000
Pavir.Eb00701 Panicum virgatum Pavir.Eb00701 I 0.000
Pavir.Eb00702 Panicum virgatum Pavir.Eb00702 I 0.000
Pavir.Eb02845 Panicum virgatum Pavir.Eb02845 I 0.000
Pavir.J00384 Panicum virgatum Pavir.J00384 I 0.000
Pavir.J13012 Panicum virgatum Pavir.J13012 I 0.000
Pavir.J23476 Panicum virgatum Pavir.J23476 I 0.000
PGSC0003DMG400000811 Solanum tuberosum PGSC0003DMG400000811 I 0.000
PGSC0003DMG400007458 Solanum tuberosum PGSC0003DMG400007458 I 0.000
PK15652.1 Cannabis sativa PK15652.1 I 0.000
Pm029015 Prunus mume Pm029015 I 0.000
POPTR_0008s11600 Populus trichocarpa POPTR_0008s11600 I 0.000
POPTR_0010s13930 Populus trichocarpa POPTR_0010s13930 I 0.000
PRUPE_ppa006243mg Prunus persica PRUPE_ppa006243mg I 0.000
RAV1 Arabidopsis lyrata scaffold_101479.1 I 0.000
RAV1 Arabidopsis thaliana AT1G13260 D 0.000
RAV2 Arabidopsis lyrata fgenesh2_kg.2__1141__AT1G68840.1 I 0.000
RAV2 Arabidopsis thaliana AT1G68840 D 0.000
SapurV1A.0079s0450 Salix purpurea SapurV1A.0079s0450 I 0.000
SapurV1A.1001s0020 Salix purpurea SapurV1A.1001s0020 I 0.000
SapurV1A.3302s0010 Salix purpurea SapurV1A.3302s0010 I 0.000
Sb03g006590 Sorghum bicolor Sb03g006590 I 0.000
Sb03g031860 Sorghum bicolor Sb03g031860 I 0.000
Sb09g027530 Sorghum bicolor Sb09g027530 I 0.000
SELMODRAFT_110104 Selaginella moellendorffii SELMODRAFT_110104 I 0.000
SELMODRAFT_133669 Selaginella moellendorffii SELMODRAFT_133669 I 0.000
Si001909m.g Setaria italica Si001909m.g I 0.000
Si004045m.g Setaria italica Si004045m.g I 0.000
Si024576m.g Setaria italica Si024576m.g I 0.000
Solyc04g007000.1 Solanum lycopersicum Solyc04g007000.1 I 0.000
Solyc05g009790.1 Solanum lycopersicum Solyc05g009790.1 I 0.000
TCM_011862 Theobroma cacao TCM_011862 I 0.000
TEM1 Arabidopsis lyrata scaffold_102941.1 I 0.000
Thhalv10004508m.g Eutrema salsugineum Thhalv10004508m.g I 0.000
Thhalv10007983m.g Eutrema salsugineum Thhalv10007983m.g I 0.000
Thhalv10010019m.g Eutrema salsugineum Thhalv10010019m.g I 0.000
Thhalv10019566m.g Eutrema salsugineum Thhalv10019566m.g I 0.000
TRAES3BF062600010CFD_g Triticum aestivum TRAES3BF062600010CFD_g I 0.000
TRAES3BF062700040CFD_g Triticum aestivum TRAES3BF062700040CFD_g I 0.000
TRAES3BF098200010CFD_g Triticum aestivum TRAES3BF098200010CFD_g I 0.000
TRAES3BF098300010CFD_g Triticum aestivum TRAES3BF098300010CFD_g I 0.000
TRAES3BF108500010CFD_g Triticum aestivum TRAES3BF108500010CFD_g I 0.000
Traes_3B_90BE2090B Triticum aestivum Traes_3B_90BE2090B I 0.000
Traes_3B_DF7E92499 Triticum aestivum Traes_3B_DF7E92499 I 0.000
Traes_3B_DF7E924991 Triticum aestivum Traes_3B_DF7E924991 I 0.000
TRIUR3_24851 Triticum urartu TRIUR3_24851 I 0.000
TRIUR3_27886 Triticum urartu TRIUR3_27886 I 0.000
VIT_01s0011g03070 Vitis vinifera VIT_01s0011g03070 I 0.000
VIT_14s0083g00130 Vitis vinifera VIT_14s0083g00130 I 0.000