CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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MTR_5g038910
(
Medicago truncatula
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00249 (Myb_DNA-binding)
IPR014778
MTR_5g038910
T274858_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
MYB124
M01267_2.00
Arabidopsis thaliana
NNVCGCKCBN
NVGMGCGBNN
PBM
Lambert et al.(2019)
pTH11556
0.817
0.890
MYB88
M07042_2.00
Arabidopsis thaliana
NNNHNACGCKCCDHH
DDHGGMGCGTNDNNN
Dap-seq
OMalley et al.(2016)
MYB88_col_a
0.780
0.857
MYB88
M07043_2.00
Arabidopsis thaliana
NNNACGCTCCHNN
NNDGGAGCGTNNN
Dap-seq
OMalley et al.(2016)
MYB88_colamp_a
0.780
0.857
MYB88
M11038_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MYB88_01
0.780
0.857
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
AES96593
Myb
27
72
VTWTQEEDDILRDQIGIHGTENWAIIASKFKDKTTRQCRRRWYTYL
AES96593
Myb
78
122
KGGWSPEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTL
KEH27808
Myb
27
72
VTWTQEEDDILRDQIGIHGTENWAIIASKFKDKTTRQCRRRWYTYL
KEH27808
Myb
78
122
KGGWSPEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTL
Links
Other
Myb/SANT
family TFs
Other
Medicago truncatula
TFs
76 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Ca_18779
Cicer arietinum
Ca_18779
I
0.909
Ciclev10031405m.g
Citrus clementina
Ciclev10031405m.g
I
0.902
orange1.1g044977m.g
Citrus sinensis
orange1.1g044977m.g
I
0.902
PK05123.1
Cannabis sativa
PK05123.1
I
0.900
Eucgr.B03417
Eucalyptus grandis
Eucgr.B03417
I
0.882
cassava39089.m1
Manihot esculenta
cassava39089.m1
I
0.879
cassava35260.valid.m1
Manihot esculenta
cassava35260.valid.m1
I
0.879
POPTR_0010s10310
Populus trichocarpa
POPTR_0010s10310
I
0.879
GLYMA02G02310
Glycine max
GLYMA02G02310
I
0.879
SapurV1A.0062s0030
Salix purpurea
SapurV1A.0062s0030
I
0.879
MDP0000165523
Malus domestica
MDP0000165523
I
0.879
PRUPE_ppa017536mg
Prunus persica
PRUPE_ppa017536mg
I
0.871
Pm006532
Prunus mume
Pm006532
I
0.871
Gorai.005G139500
Gossypium raimondii
Gorai.005G139500
I
0.871
evm.TU.supercontig_183.27
Carica papaya
evm.TU.supercontig_183.27
I
0.871
SapurV1A.0200s0020
Salix purpurea
SapurV1A.0200s0020
I
0.870
POPTR_0008s14790
Populus trichocarpa
POPTR_0008s14790
I
0.870
GLYMA01G05190
Glycine max
GLYMA01G05190
I
0.870
MDP0000210970
Malus domestica
MDP0000210970
I
0.863
GLYMA18G16040
Glycine max
GLYMA18G16040
I
0.862
GLYMA08G40950
Glycine max
GLYMA08G40950
I
0.862
MTR_8g468380
Medicago truncatula
MTR_8g468380
I
0.860
29736.m002013
Ricinus communis
29736.m002013
I
0.858
PGSC0003DMG400025612
Solanum tuberosum
PGSC0003DMG400025612
I
0.856
Solyc05g007160.2
Solanum lycopersicum
Solyc05g007160.2
I
0.856
TCM_011776
Theobroma cacao
TCM_011776
I
0.849
Gorai.013G083300
Gossypium raimondii
Gorai.013G083300
I
0.845
VIT_01s0026g01910
Vitis vinifera
VIT_01s0026g01910
I
0.845
Aquca_002_00543
Aquilegia coerulea
Aquca_002_00543
I
0.845
Cla010333
Citrullus lanatus
Cla010333
I
0.843
Cucsa.285270
Cucumis sativus
Cucsa.285270
I
0.843
Eucgr.G02522
Eucalyptus grandis
Eucgr.G02522
I
0.826
MYB124
Arabidopsis thaliana
AT1G14350
D
0.817
Cagra.3501s0066
Capsella grandiflora
Cagra.3501s0066
I
0.801
Bostr.13671s0016
Boechera stricta
Bostr.13671s0016
I
0.801
Carubv10011707m.g
Capsella rubella
Carubv10011707m.g
I
0.801
Bra019658
Brassica rapa
Bra019658
I
0.800
Thhalv10007659m.g
Eutrema salsugineum
Thhalv10007659m.g
I
0.800
Thhalv10004109m.g
Eutrema salsugineum
Thhalv10004109m.g
I
0.797
Lus10012847.g
Linum usitatissimum
Lus10012847.g
I
0.795
Lus10030494.g
Linum usitatissimum
Lus10030494.g
I
0.795
mgf009409m
Mimulus guttatus
mgf009409m
I
0.794
FLP
Arabidopsis lyrata
fgenesh2_kg.1__1561__AT1G14350.1
I
0.792
Bo5g019500
Brassica oleracea
Bo5g019500
I
0.791
Bo2g136560
Brassica oleracea
Bo2g136560
I
0.789
Bra024804
Brassica rapa
Bra024804
I
0.780
Bo7g080730
Brassica oleracea
Bo7g080730
I
0.780
MYB88
Arabidopsis lyrata
fgenesh2_kg.5__181__AT2G02820.2
I
0.780
MYB88
Arabidopsis thaliana
AT2G02820
D
0.780
Bostr.0556s0099
Boechera stricta
Bostr.0556s0099
I
0.780
Solyc04g005710.1
Solanum lycopersicum
Solyc04g005710.1
I
0.778
PGSC0003DMG400026758
Solanum tuberosum
PGSC0003DMG400026758
I
0.761
PGSC0003DMG400002828
Solanum tuberosum
PGSC0003DMG400002828
I
0.761
Cagra.0534s0022
Capsella grandiflora
Cagra.0534s0022
I
0.759
Carubv10017119m.g
Capsella rubella
Carubv10017119m.g
I
0.759
AMTR_s00010p00252990
Amborella trichopoda
AMTR_s00010p00252990
I
0.752
GSMUA_Achr10G18880_001
Musa acuminata
GSMUA_Achr10G18880_001
I
0.748
Traes_2AS_1161E1D2E
Triticum aestivum
Traes_2AS_1161E1D2E
I
0.704
Traes_2BS_F1B450FA4
Triticum aestivum
Traes_2BS_F1B450FA4
I
0.704
Traes_2DS_9430AAD52
Triticum aestivum
Traes_2DS_9430AAD52
I
0.704
Si029124m.g
Setaria italica
Si029124m.g
I
0.702
Pavir.Bb03405
Panicum virgatum
Pavir.Bb03405
I
0.702
PDK_20s1473891g001
Phoenix dactylifera
PDK_20s1473891g001
I
0.700
BGIOSGA026188
Oryza indica
BGIOSGA026188
I
0.694
ORGLA07G0179200
Oryza glaberrima
ORGLA07G0179200
I
0.694
ORUFI07G24080
Oryza rufipogon
ORUFI07G24080
I
0.694
OS07G0627300
Oryza sativa
OS07G0627300
I
0.694
OGLUM07G22980
Oryza glumaepatula
OGLUM07G22980
I
0.694
GRMZM2G064630
Zea mays
GRMZM2G064630
I
0.694
Sb02g040050
Sorghum bicolor
Sb02g040050
I
0.694
OBART07G22930
Oryza barthii
OBART07G22930
I
0.694
Pavir.J36475
Panicum virgatum
Pavir.J36475
I
0.693
GSMUA_Achr6G10650_001
Musa acuminata
GSMUA_Achr6G10650_001
I
0.691
OB07G28520
Oryza brachyantha
OB07G28520
I
0.690
OPUNC07G21540
Oryza punctata
OPUNC07G21540
I
0.685