CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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MTR_7g061330
(
Medicago truncatula
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00249 (Myb_DNA-binding)
IPR014778
MTR_7g061330
T274923_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
MYB3R5
M07116_2.00
Arabidopsis thaliana
NWWWWNTDRCCGTTR
YAACGGYHANWWWWN
Dap-seq
OMalley et al.(2016)
MYB3R5_col_a
0.771
0.879
Q948S5_TOBAC
M11074_2.00
Nicotiana tabacum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MYBA2_01
0.690
0.779
PK12011.1
M01279_2.00
Cannabis sativa
HAACGGHHNN
NNDDCCGTTD
PBM
Lambert et al.(2019)
pTH11423
0.676
0.779
PC-MYB1
M07110_2.00
Arabidopsis thaliana
NDWWNTDRCCGTTRN
NYAACGGYHANWWHN
Dap-seq
OMalley et al.(2016)
MYB3R1_col_a
0.669
0.729
PC-MYB1
M07111_2.00
Arabidopsis thaliana
DWHNTDRCCGTTR
YAACGGYHANDWH
Dap-seq
OMalley et al.(2016)
MYB3R1_colamp_a
0.669
0.729
MYB3R4
M07125_2.00
Arabidopsis thaliana
NDWWNTDRCCGTTRN
NYAACGGYHANWWHN
Dap-seq
OMalley et al.(2016)
MYB3R4_col_a
0.661
0.743
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
AES79331
Myb
61
107
KGGWTAEEDETLRNAVAAFKGKHWKKIAEFFADRSEVQCLHRWQKVL
AES79331
Myb
113
159
KGPWTQEEDDKIVELVAKYGPTKWSLIAKSLPGRIGKQCRERWHNHL
AES79331
Myb
165
210
KDAWTLEEELALMNAHRIHGNKWAEIAKVLPGRTDNAIKNHWNSSL
KEH22877
Myb
25
71
KGGWTAEEDETLRNAVAAFKGKHWKKIAEFFADRSEVQCLHRWQKVL
KEH22877
Myb
77
123
KGPWTQEEDDKIVELVAKYGPTKWSLIAKSLPGRIGKQCRERWHNHL
KEH22877
Myb
129
174
KDAWTLEEELALMNAHRIHGNKWAEIAKVLPGRTDNAIKNHWNSSL
Links
Other
Myb/SANT
family TFs
Other
Medicago truncatula
TFs
140 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy