OBART03G24120 (Oryza barthii)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 OBART03G24120 T275491_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Gam1
M02703_2.00
Hordeum vulgare
NVYAACSGMC

GKCSGTTRBN
SELEX
Mathelier et al.(2014)
MA0034.1
0.724 0.793
Gam1
M11061_2.00
Hordeum vulgare
YAACSRHM

KDYSGTTR
Transfac
Matys et al.(2006)
P$GAMYB_01
0.724 0.793
MYB101
M07051_2.00
Arabidopsis thaliana
NWHHNWAACCGWWHH

DDWWCGGTTWNDDWN
Dap-seq
OMalley et al.(2016)
MYB101_col_a
0.715 0.815
MYB101
M07052_2.00
Arabidopsis thaliana
DHHHVTAACYGWHWN

NWDWCRGTTABDDDH
Dap-seq
OMalley et al.(2016)
MYB101_colamp_a
0.715 0.815
GAM1_ORYSI
M11055_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$GAMYB_Q2
0.707 0.783
MYB33
M02306_2.00
Arabidopsis thaliana
HAACNRHHNN

NNDDYNGTTD
PBM
Weirauch et al.(2014)
pTH8204
0.668 0.739
MYB33
M07120_2.00
Arabidopsis thaliana
NTAACYGWHWH

DWDWCRGTTAN
Dap-seq
OMalley et al.(2016)
MYB33_col_a
0.668 0.739
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OBART03G24120.1 Myb 55 102
OBART03G24120.1 Myb 108 152

Links

Other Myb/SANT family TFs
Other Oryza barthii TFs

222 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
GAM1_ORYSI Oryza sativa GAM1_ORYSI D 0.707
MYB101 Arabidopsis thaliana AT2G32460 D 0.715
MYB33 Arabidopsis thaliana AT5G06100 D 0.668
Gam1 Hordeum vulgare Q96464_HORVU D 0.724
mgf025568m Mimulus guttatus mgf025568m I 0.669
mgf020500m Mimulus guttatus mgf020500m I 0.674
mgf019173m Mimulus guttatus mgf019173m I 0.711
mgf010934m Mimulus guttatus mgf010934m I 0.711
mgf002965m Mimulus guttatus mgf002965m I 0.711
gw1.66.160.1 Physcomitrella patens gw1.66.160.1 I 0.664
gw1.238.44.1 Physcomitrella patens gw1.238.44.1 I 0.664
Cucsa.364400 Cucumis sativus Cucsa.364400 I 0.690
Cucsa.148580 Cucumis sativus Cucsa.148580 I 0.667
Cucsa.060080 Cucumis sativus Cucsa.060080 I 0.684
cassava44767.m1 Manihot esculenta cassava44767.m1 I 0.706
Aquca_005_00025 Aquilegia coerulea Aquca_005_00025 I 0.713
Aquca_014_00928 Aquilegia coerulea Aquca_014_00928 I 0.678
Bostr.13129s0364 Boechera stricta Bostr.13129s0364 I 0.688
Eucgr.A01122 Eucalyptus grandis Eucgr.A01122 I 0.692
Ciclev10014958m.g Citrus clementina Ciclev10014958m.g I 0.688
Ciclev10010620m.g Citrus clementina Ciclev10010620m.g I 0.736
Ciclev10000756m.g Citrus clementina Ciclev10000756m.g I 0.675
Carubv10026070m.g Capsella rubella Carubv10026070m.g I 0.722
Carubv10025227m.g Capsella rubella Carubv10025227m.g I 0.698
Carubv10000715m.g Capsella rubella Carubv10000715m.g I 0.688
Cagra.2117s0052 Capsella grandiflora Cagra.2117s0052 I 0.688
Cagra.1629s0073 Capsella grandiflora Cagra.1629s0073 I 0.722
Cagra.0352s0034 Capsella grandiflora Cagra.0352s0034 I 0.698
Bostr.26833s0761 Boechera stricta Bostr.26833s0761 I 0.722
Bostr.23794s0867 Boechera stricta Bostr.23794s0867 I 0.715
Eucgr.G03183 Eucalyptus grandis Eucgr.G03183 I 0.702
cassava40302.m1 Manihot esculenta cassava40302.m1 I 0.712
Ca_20081 Cicer arietinum Ca_20081 I 0.746
VIT_19s0090g00590 Vitis vinifera VIT_19s0090g00590 I 0.684
VIT_13s0067g01630 Vitis vinifera VIT_13s0067g01630 I 0.702
MYB101 Vitis vinifera VIT_12s0059g00700 I 0.742
VIT_06s0009g02480 Vitis vinifera VIT_06s0009g02480 I 0.702
TRIUR3_27104 Triticum urartu TRIUR3_27104 I 0.724
TRIUR3_22706 Triticum urartu TRIUR3_22706 I 0.668
TRIUR3_20797 Triticum urartu TRIUR3_20797 I 0.852
TRIUR3_17146 Triticum urartu TRIUR3_17146 I 0.730
Traes_7DS_8DF2537B8 Triticum aestivum Traes_7DS_8DF2537B8 I 0.758
Traes_7DL_FAF2AE9FB Triticum aestivum Traes_7DL_FAF2AE9FB I 0.730
Ca_21739 Cicer arietinum Ca_21739 I 0.689
Ca_25013 Cicer arietinum Ca_25013 I 0.721
Cla005406 Citrullus lanatus Cla005406 I 0.701
cassava30977.valid.m1 Manihot esculenta cassava30977.valid.m1 I 0.686
cassava1461.valid.m1 Manihot esculenta cassava1461.valid.m1 I 0.699
cassava11031.m1 Manihot esculenta cassava11031.m1 I 0.715
29823.m000215 Ricinus communis 29823.m000215 I 0.691
29785.m000932 Ricinus communis 29785.m000932 I 0.669
29686.m000890 Ricinus communis 29686.m000890 I 0.699
Pm016605 Prunus mume Pm016605 I 0.720
Pm015094 Prunus mume Pm015094 I 0.718
Pm011812 Prunus mume Pm011812 I 0.664
Cla013880 Citrullus lanatus Cla013880 I 0.690
Cla007782 Citrullus lanatus Cla007782 I 0.667
Traes_7AL_0AD4A7A87 Triticum aestivum Traes_7AL_0AD4A7A87 I 0.730
PDK_20s1831811g001 Phoenix dactylifera PDK_20s1831811g001 I 0.678
SapurV1A.0014s1240 Salix purpurea SapurV1A.0014s1240 I 0.664
SapurV1A.0008s0050 Salix purpurea SapurV1A.0008s0050 I 0.699
Pavir.Ib03827 Panicum virgatum Pavir.Ib03827 I 0.832
Pavir.Eb03517 Panicum virgatum Pavir.Eb03517 I 0.714
Pavir.Ea03206 Panicum virgatum Pavir.Ea03206 I 0.724
Pavir.Db00593 Panicum virgatum Pavir.Db00593 I 0.700
Pavir.Da00077 Panicum virgatum Pavir.Da00077 I 0.689
Pavir.Ab00447 Panicum virgatum Pavir.Ab00447 I 0.685
orange1.1g046419m.g Citrus sinensis orange1.1g046419m.g I 0.736
orange1.1g039708m.g Citrus sinensis orange1.1g039708m.g I 0.688
orange1.1g011938m.g Citrus sinensis orange1.1g011938m.g I 0.675
SapurV1A.0369s0230 Salix purpurea SapurV1A.0369s0230 I 0.699
SapurV1A.0537s0200 Salix purpurea SapurV1A.0537s0200 I 0.705
SapurV1A.1897s0070 Salix purpurea SapurV1A.1897s0070 I 0.692
LjT02G13.10.nc Lotus japonicus LjT02G13.10.nc I 0.788
LjSGA_057622.2 Lotus japonicus LjSGA_057622.2 I 0.730
chr3.CM0005.370.nc Lotus japonicus chr3.CM0005.370.nc I 0.705
PK17293.1 Cannabis sativa PK17293.1 I 0.681
PK15478.1 Cannabis sativa PK15478.1 I 0.731
Thhalv10025350m.g Eutrema salsugineum Thhalv10025350m.g I 0.700
Thhalv10016567m.g Eutrema salsugineum Thhalv10016567m.g I 0.698
Thhalv10013329m.g Eutrema salsugineum Thhalv10013329m.g I 0.691
Thhalv10013018m.g Eutrema salsugineum Thhalv10013018m.g I 0.722
SapurV1A.2567s0040 Salix purpurea SapurV1A.2567s0040 I 0.692
SapurV1A.1951s0020 Salix purpurea SapurV1A.1951s0020 I 0.683
MDP0000308617 Malus domestica MDP0000308617 I 0.739
MDP0000179306 Malus domestica MDP0000179306 I 0.712
MDP0000176798 Malus domestica MDP0000176798 I 0.720
Gorai.009G301100 Gossypium raimondii Gorai.009G301100 I 0.695
Gorai.007G312700 Gossypium raimondii Gorai.007G312700 I 0.705
Gorai.007G312400 Gossypium raimondii Gorai.007G312400 I 0.673
Gorai.006G121900 Gossypium raimondii Gorai.006G121900 I 0.684
Gorai.002G089900 Gossypium raimondii Gorai.002G089900 I 0.702
gene23946-v1.0-hybrid Fragaria vesca gene23946-v1.0-hybrid I 0.666
gene03323-v1.0-hybrid Fragaria vesca gene03323-v1.0-hybrid I 0.696
gene03321-v1.0-hybrid Fragaria vesca gene03321-v1.0-hybrid I 0.696
gene00431-v1.0-hybrid Fragaria vesca gene00431-v1.0-hybrid I 0.737
evm.TU.supercontig_34.210 Carica papaya evm.TU.supercontig_34.210 I 0.676
evm.TU.supercontig_33.151 Carica papaya evm.TU.supercontig_33.151 I 0.699
Gorai.010G212500 Gossypium raimondii Gorai.010G212500 I 0.699
Gorai.012G022000 Gossypium raimondii Gorai.012G022000 I 0.690
Gorai.013G159200 Gossypium raimondii Gorai.013G159200 I 0.706
MDP0000175835 Malus domestica MDP0000175835 I 0.717
MDP0000151688 Malus domestica MDP0000151688 I 0.720
MDP0000147309 Malus domestica MDP0000147309 I 0.711
Lus10040063.g Linum usitatissimum Lus10040063.g I 0.751
Lus10036103.g Linum usitatissimum Lus10036103.g I 0.706
Lus10035275.g Linum usitatissimum Lus10035275.g I 0.673
Lus10027189.g Linum usitatissimum Lus10027189.g I 0.673
Lus10026787.g Linum usitatissimum Lus10026787.g I 0.706
Lus10026142.g Linum usitatissimum Lus10026142.g I 0.699
Lus10021539.g Linum usitatissimum Lus10021539.g I 0.742
Lus10008685.g Linum usitatissimum Lus10008685.g I 0.699
evm.TU.supercontig_12.292 Carica papaya evm.TU.supercontig_12.292 I 0.726
OB01G43550 Oryza brachyantha OB01G43550 I 0.707
GSMUA_Achr1G17150_001 Musa acuminata GSMUA_Achr1G17150_001 I 0.721
GRMZM2G139688 Zea mays GRMZM2G139688 I 0.724
GRMZM2G070523 Zea mays GRMZM2G070523 I 0.821
GLYMA18G10921 Glycine max GLYMA18G10921 I 0.739
GLYMA15G35860 Glycine max GLYMA15G35860 I 0.682
GLYMA13G38521 Glycine max GLYMA13G38521 I 0.677
GLYMA13G25716 Glycine max GLYMA13G25716 I 0.701
GLYMA08G43000 Glycine max GLYMA08G43000 I 0.697
GLYMA08G42955 Glycine max GLYMA08G42955 I 0.746
GLYMA08G42920 Glycine max GLYMA08G42920 I 0.744
GLYMA06G47000 Glycine max GLYMA06G47000 I 0.671
GSMUA_Achr3G12730_001 Musa acuminata GSMUA_Achr3G12730_001 I 0.668
GSMUA_Achr4G23690_001 Musa acuminata GSMUA_Achr4G23690_001 I 0.780
GSMUA_Achr7G00280_001 Musa acuminata GSMUA_Achr7G00280_001 I 0.745
OB01G22230 Oryza brachyantha OB01G22230 I 0.661
MTR_8g042410 Medicago truncatula MTR_8g042410 I 0.704
MTR_3g052450 Medicago truncatula MTR_3g052450 I 0.704
MTR_3g052430 Medicago truncatula MTR_3g052430 I 0.733
MTR_3g011610 Medicago truncatula MTR_3g011610 I 0.713
MTR_2g088170 Medicago truncatula MTR_2g088170 I 0.666
MTR_1g021230 Medicago truncatula MTR_1g021230 I 0.679
MLOC_6041 Hordeum vulgare MLOC_6041 I 0.839
LPERR06G20610 Leersia perrieri LPERR06G20610 I 0.671
LPERR03G20110 Leersia perrieri LPERR03G20110 I 0.865
GSMUA_AchrUn_randomG15100_001 Musa acuminata GSMUA_AchrUn_randomG15100_001 I 0.691
MYB97 Arabidopsis lyrata fgenesh2_kg.7__1539__AT4G26930.1 I 0.719
MYB33 Arabidopsis lyrata fgenesh2_kg.6__546__AT5G06100.3 I 0.692
Bo9g119060 Brassica oleracea Bo9g119060 I 0.722
Bo4g178040 Brassica oleracea Bo4g178040 I 0.715
Bo4g046000 Brassica oleracea Bo4g046000 I 0.710
Bo3g026690 Brassica oleracea Bo3g026690 I 0.715
Bo3g021790 Brassica oleracea Bo3g021790 I 0.702
BGIOSGA020673 Oryza indica BGIOSGA020673 I 0.696
GAM1 Oryza indica BGIOSGA004670 I 0.707
ATMYB120 Arabidopsis thaliana AT5G55020 I 0.722
MYB97 Arabidopsis thaliana AT4G26930 I 0.719
AMTR_s00038p00150140 Amborella trichopoda AMTR_s00038p00150140 I 0.719
AMTR_s00037p00177500 Amborella trichopoda AMTR_s00037p00177500 I 0.726
Bra002938 Brassica rapa Bra002938 I 0.722
Bra005597 Brassica rapa Bra005597 I 0.710
Bra012038 Brassica rapa Bra012038 I 0.665
MYB101 Arabidopsis lyrata fgenesh2_kg.4__1233__AT2G32460.2 I 0.715
F775_28392 Aegilops tauschii F775_28392 I 0.724
F775_23034 Aegilops tauschii F775_23034 I 0.852
F775_14392 Aegilops tauschii F775_14392 I 0.668
F775_00954 Aegilops tauschii F775_00954 I 0.730
BRADI2G53010 Brachypodium distachyon BRADI2G53010 I 0.724
BRADI1G32720 Brachypodium distachyon BRADI1G32720 I 0.731
Bra035547 Brassica rapa Bra035547 I 0.684
Bra028997 Brassica rapa Bra028997 I 0.702
Bra022888 Brassica rapa Bra022888 I 0.700
Bra021791 Brassica rapa Bra021791 I 0.715
AC217264.3_FG005 Zea mays AC217264.3_FG005 I 0.830
OB03G32840 Oryza brachyantha OB03G32840 I 0.875
Traes_6DS_A0EC5D808 Triticum aestivum Traes_6DS_A0EC5D808 I 0.668
SELMODRAFT_81112 Selaginella moellendorffii SELMODRAFT_81112 I 0.700
SELMODRAFT_128781 Selaginella moellendorffii SELMODRAFT_128781 I 0.700
SELMODRAFT_117411 Selaginella moellendorffii SELMODRAFT_117411 I 0.691
Sb10g027280 Sorghum bicolor Sb10g027280 I 0.697
Sb03g037680 Sorghum bicolor Sb03g037680 I 0.698
Sb01g015920 Sorghum bicolor Sb01g015920 I 0.830
PRUPE_ppa022465mg Prunus persica PRUPE_ppa022465mg I 0.679
PRUPE_ppa019943mg Prunus persica PRUPE_ppa019943mg I 0.682
PRUPE_ppa017451mg Prunus persica PRUPE_ppa017451mg I 0.718
PRUPE_ppa003628mg Prunus persica PRUPE_ppa003628mg I 0.720
POPTR_0009s02380 Populus trichocarpa POPTR_0009s02380 I 0.683
SELMODRAFT_84369 Selaginella moellendorffii SELMODRAFT_84369 I 0.691
Si000907m.g Setaria italica Si000907m.g I 0.715
Si006555m.g Setaria italica Si006555m.g I 0.700
Traes_6AS_5562B97F7 Triticum aestivum Traes_6AS_5562B97F7 I 0.668
TRAES3BF027700010CFD_g Triticum aestivum TRAES3BF027700010CFD_g I 0.724
TCM_044611 Theobroma cacao TCM_044611 I 0.699
TCM_041010 Theobroma cacao TCM_041010 I 0.686
TCM_030853 Theobroma cacao TCM_030853 I 0.702
TCM_011907 Theobroma cacao TCM_011907 I 0.688
Solyc11g072060.1 Solanum lycopersicum Solyc11g072060.1 I 0.664
Solyc07g052300.2 Solanum lycopersicum Solyc07g052300.2 I 0.677
Solyc06g073640.2 Solanum lycopersicum Solyc06g073640.2 I 0.686
Solyc01g009070.2 Solanum lycopersicum Solyc01g009070.2 I 0.681
Si039629m.g Setaria italica Si039629m.g I 0.841
POPTR_0003s18900 Populus trichocarpa POPTR_0003s18900 I 0.699
MYB101 Populus trichocarpa POPTR_0002s21300 I 0.673
ONIVA06G28020 Oryza nivara ONIVA06G28020 I 0.696
ONIVA04G15310 Oryza nivara ONIVA04G15310 I 0.909
OMERI06G24960 Oryza meridionalis OMERI06G24960 I 0.696
OMERI03G21920 Oryza meridionalis OMERI03G21920 I 0.909
OMERI01G31990 Oryza meridionalis OMERI01G31990 I 0.707
OLONG_025057 Oryza longistaminata OLONG_025057 I 0.909
OLONG_020610 Oryza longistaminata OLONG_020610 I 0.707
OLONG_019401 Oryza longistaminata OLONG_019401 I 0.684
OGLUM06G26120 Oryza glumaepatula OGLUM06G26120 I 0.696
OGLUM03G24880 Oryza glumaepatula OGLUM03G24880 I 0.909
OGLUM01G20920 Oryza glumaepatula OGLUM01G20920 I 0.707
OPUNC03G22220 Oryza punctata OPUNC03G22220 I 0.900
OPUNC06G18670 Oryza punctata OPUNC06G18670 I 0.663
OPUNC06G22490 Oryza punctata OPUNC06G22490 I 0.696
POPTR_0001s07330 Populus trichocarpa POPTR_0001s07330 I 0.699
PGSC0003DMG400028949 Solanum tuberosum PGSC0003DMG400028949 I 0.677
PGSC0003DMG400022689 Solanum tuberosum PGSC0003DMG400022689 I 0.681
PGSC0003DMG400013897 Solanum tuberosum PGSC0003DMG400013897 I 0.701
PGSC0003DMG400005918 Solanum tuberosum PGSC0003DMG400005918 I 0.686
OS06G0679400 Oryza sativa OS06G0679400 I 0.696
OS03G0578900 Oryza sativa OS03G0578900 I 0.909
GAMYB Oryza sativa OS01G0812000 I 0.707
ORUFI06G26670 Oryza rufipogon ORUFI06G26670 I 0.696
ORUFI03G24730 Oryza rufipogon ORUFI03G24730 I 0.909
ORGLA03G0224700 Oryza glaberrima ORGLA03G0224700 I 0.909
OBART01G34660 Oryza barthii OBART01G34660 I 0.707