CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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OBART04G08050
(
Oryza barthii
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00249 (Myb_DNA-binding)
IPR014778
OBART04G08050
T275500_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AT3G16350
M01078_2.00
Arabidopsis thaliana
NYTATCYDNN
NNHRGATARN
PBM
Sullivan et al.(2014)
pTH7149
0.832
0.837
fgenesh1_pg.scaffold_70000111
M02342_2.00
Physcomitrella patens
NNHNATCBN
NVGATNDNN
PBM
Weirauch et al.(2014)
pTH8492
0.831
0.860
PK23829.1
M02355_2.00
Cannabis sativa
VTTATCCD
HGGATAAB
PBM
Weirauch et al.(2014)
pTH9592
0.824
0.860
PK29550.1
M02358_2.00
Cannabis sativa
NNHDATCYNN
NNRGATHDNN
PBM
Weirauch et al.(2014)
pTH9595
0.822
0.814
PK17526.1
M02353_2.00
Cannabis sativa
NNTTATCCAN
NTGGATAANN
PBM
Weirauch et al.(2014)
pTH9588
0.813
0.837
AT1G19000
M02287_2.00
Arabidopsis thaliana
NYTATCYDNN
NNHRGATARN
PBM
Weirauch et al.(2014)
pTH7120
0.775
0.791
AT1G19000
M07012_2.00
Arabidopsis thaliana
HDYHTTATCCAHWW
WWDTGGATAADRHD
Dap-seq
OMalley et al.(2016)
At1g19000_col_a
0.775
0.791
AT1G19000
M07013_2.00
Arabidopsis thaliana
WDYNTTATCCAHWW
WWDTGGATAANRHW
Dap-seq
OMalley et al.(2016)
At1g19000_colamp_a
0.775
0.791
PK00738.1
M02346_2.00
Cannabis sativa
NYWATCYDNN
NNHRGATWRN
PBM
Weirauch et al.(2014)
pTH9487
0.773
0.814
KUA1
M02312_2.00
Arabidopsis thaliana
NNTTATCCDN
NHGGATAANN
PBM
Weirauch et al.(2014)
pTH7647
0.772
0.814
KUA1
M07136_2.00
Arabidopsis thaliana
WWHHTTATCCAHWW
WWDTGGATAADDWW
Dap-seq
OMalley et al.(2016)
At5g47390_colamp_a
0.772
0.814
KUA1
M07137_2.00
Arabidopsis thaliana
HHWDYHTTATCCAHW
WDTGGATAADRHWDD
Dap-seq
OMalley et al.(2016)
At5g47390_col_b
0.772
0.814
AT3G10580
M07072_2.00
Arabidopsis thaliana
AWBCTTATCYWHWHH
DDWDWRGATAAGVWT
Dap-seq
OMalley et al.(2016)
AT3G10580_col_a
0.759
0.744
AT3G10580
M07073_2.00
Arabidopsis thaliana
CCGAWAAWNTCGGDD
HHCCGANWTTWTCGG
Dap-seq
OMalley et al.(2016)
AT3G10580_colamp_a
0.759
0.744
0600010132
M02360_2.00
Ostreococcus tauri
NNVTTATCCDNNN
NNNHGGATAABNN
PBM
Weirauch et al.(2014)
pTH9441
0.746
0.767
AT5G61620
M07149_2.00
Arabidopsis thaliana
WWHHTTATCCAHWWN
NWWDTGGATAADDWW
Dap-seq
OMalley et al.(2016)
AT5G61620_col_a
0.746
0.744
AT5G61620
M07150_2.00
Arabidopsis thaliana
YHTTATCCAHW
WDTGGATAADR
Dap-seq
OMalley et al.(2016)
AT5G61620_colamp_a
0.746
0.744
AT5G56840
M07144_2.00
Arabidopsis thaliana
WWYMTTATCCAWWWN
NWWWTGGATAAKRWW
Dap-seq
OMalley et al.(2016)
AT5G56840_col_a
0.721
0.744
AT5G56840
M07145_2.00
Arabidopsis thaliana
HHHWWYHTTATCCWHW
WDWGGATAADRWWDDD
Dap-seq
OMalley et al.(2016)
AT5G56840_colamp_a
0.721
0.744
AT1G74840
M02291_2.00
Arabidopsis thaliana
NGWTATCCRNN
NNYGGATAWCN
PBM
Weirauch et al.(2014)
pTH7074
0.706
0.791
AT1G74840
M07037_2.00
Arabidopsis thaliana
HHTTATCCAHW
WDTGGATAADD
Dap-seq
OMalley et al.(2016)
At1g74840_col100_a
0.706
0.791
AT1G74840
M07038_2.00
Arabidopsis thaliana
HWNHTTATCCAHWW
WWDTGGATAADNWD
Dap-seq
OMalley et al.(2016)
At1g74840_colamp_a
0.706
0.791
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
OBART04G08050.1
Myb
44
87
TEEEHRLFLLGLDKFGKGDLQSISRNFVISRTPTQVASHAQKYF
Links
Other
Myb/SANT
family TFs
Other
Oryza barthii
TFs
576 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy