CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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OGLUM01G40780
(
Oryza glumaepatula
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00249 (Myb_DNA-binding)
IPR014778
OGLUM01G40780
T275651_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
MYB3R5
M07116_2.00
Arabidopsis thaliana
NWWWWNTDRCCGTTR
YAACGGYHANWWWWN
Dap-seq
OMalley et al.(2016)
MYB3R5_col_a
0.746
0.879
PK12011.1
M01279_2.00
Cannabis sativa
HAACGGHHNN
NNDDCCGTTD
PBM
Lambert et al.(2019)
pTH11423
0.724
0.793
PC-MYB1
M07110_2.00
Arabidopsis thaliana
NDWWNTDRCCGTTRN
NYAACGGYHANWWHN
Dap-seq
OMalley et al.(2016)
MYB3R1_col_a
0.721
0.779
PC-MYB1
M07111_2.00
Arabidopsis thaliana
DWHNTDRCCGTTR
YAACGGYHANDWH
Dap-seq
OMalley et al.(2016)
MYB3R1_colamp_a
0.721
0.779
Q948S5_TOBAC
M11074_2.00
Nicotiana tabacum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MYBA2_01
0.701
0.779
MYB3R4
M07125_2.00
Arabidopsis thaliana
NDWWNTDRCCGTTRN
NYAACGGYHANWWHN
Dap-seq
OMalley et al.(2016)
MYB3R4_col_a
0.667
0.736
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
OGLUM01G40780.1
Myb
67
113
KGGWTPEEDETLRKAVEAYKGRNWKKIAECFPYRTEVQCLHRWQKVL
OGLUM01G40780.1
Myb
119
165
KGPWTQEEDDQIIDLVKKYGPTKWSVIAKALPGRIGKQCRERWHNHL
OGLUM01G40780.1
Myb
171
216
KDAWTTEEEQALINAHRIYGNKWAEIAKVLPGRTDNSIKNHWNSSL
OGLUM01G40780.2
Myb
67
105
KGGWTPEEDETLRKAVEAYKGRNWKKIEQRYNACIDGKR
OGLUM01G40780.2
Myb
112
153
SKEDDQIIDLVKKYGPTKWSVIAKALPGRIGKQCRERWHNHL
OGLUM01G40780.2
Myb
159
204
KDAWTTEEEQALINAHRIYGNKWAEIAKVLPGRTDNSIKNHWNSSL
Links
Other
Myb/SANT
family TFs
Other
Oryza glumaepatula
TFs
176 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy