CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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OGLUM07G22980
(
Oryza glumaepatula
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00249 (Myb_DNA-binding)
IPR014778
OGLUM07G22980
T275783_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
MYB124
M01267_2.00
Arabidopsis thaliana
NNVCGCKCBN
NVGMGCGBNN
PBM
Lambert et al.(2019)
pTH11556
0.722
0.780
MYB88
M07042_2.00
Arabidopsis thaliana
NNNHNACGCKCCDHH
DDHGGMGCGTNDNNN
Dap-seq
OMalley et al.(2016)
MYB88_col_a
0.682
0.758
MYB88
M07043_2.00
Arabidopsis thaliana
NNNACGCTCCHNN
NNDGGAGCGTNNN
Dap-seq
OMalley et al.(2016)
MYB88_colamp_a
0.682
0.758
MYB88
M11038_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MYB88_01
0.682
0.758
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
OGLUM07G22980.1
Myb
31
76
VSWSTEEDDVLRTQIALHGTDNWTIIAAQFKDKTARQCRRRWYNYL
OGLUM07G22980.1
Myb
82
126
KGGWSREEDLLLCEAQKVLGNKWTEIAKVVSGRTDNAVKNRFSTL
OGLUM07G22980.2
Myb
31
107
VSWSTEEDDVLRTQIALHGTDKYEFFPLPISIDFFFLDLITIFYTVFPFPFGSWTIIAAQFKDKTARQCRRRWYNYL
OGLUM07G22980.2
Myb
113
157
KGGWSREEDLLLCEAQKVLGNKWTEIAKVVSGRTDNAVKNRFSTL
Links
Other
Myb/SANT
family TFs
Other
Oryza glumaepatula
TFs
74 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy