OMERI01G31990 (Oryza meridionalis)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 OMERI01G31990 T276025_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
GAM1_ORYSI
M11055_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$GAMYB_Q2
0.909 1.000
Gam1
M02703_2.00
Hordeum vulgare
NVYAACSGMC

GKCSGTTRBN
SELEX
Mathelier et al.(2014)
MA0034.1
0.892 0.989
Gam1
M11061_2.00
Hordeum vulgare
YAACSRHM

KDYSGTTR
Transfac
Matys et al.(2006)
P$GAMYB_01
0.892 0.989
MYB33
M02306_2.00
Arabidopsis thaliana
HAACNRHHNN

NNDDYNGTTD
PBM
Weirauch et al.(2014)
pTH8204
0.831 0.859
MYB33
M07120_2.00
Arabidopsis thaliana
NTAACYGWHWH

DWDWCRGTTAN
Dap-seq
OMalley et al.(2016)
MYB33_col_a
0.831 0.859
ATMYB65
M01076_2.00
Arabidopsis thaliana
HAACNRHHN

NDDYNGTTD
PBM
Sullivan et al.(2014)
pTH7084
0.808 0.837
ATMYB65
M07076_2.00
Arabidopsis thaliana
DHHNTAACBGHMW

WKDCVGTTANDDH
Dap-seq
OMalley et al.(2016)
MYB65_col200_a
0.808 0.837
ATMYB65
M07077_2.00
Arabidopsis thaliana
NTAACYGHMWHNDHN

NDHNDWKDCRGTTAN
Dap-seq
OMalley et al.(2016)
MYB65_colamp_a
0.808 0.837
Q9FR42_TOBAC
M11076_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MYBAS1_01
0.806 0.815
myb.Ph3
M02704_2.00
Petunia x hybrida
WAACNGTYW

WRACNGTTW
SELEX
Mathelier et al.(2014)
MA0054.1
0.805 0.859
myb.Ph3
M11070_2.00
Petunia x hybrida
RTAACSGTTTYHW

WDRAAACSGTTAY
Transfac
Matys et al.(2006)
P$MYBPH3_01
0.805 0.859
myb.Ph3
M11071_2.00
Petunia x hybrida
STAACTAACTHHH

DDDAGTTAGTTAS
Transfac
Matys et al.(2006)
P$MYBPH3_02
0.805 0.859
MYB101
M07051_2.00
Arabidopsis thaliana
NWHHNWAACCGWWHH

DDWWCGGTTWNDDWN
Dap-seq
OMalley et al.(2016)
MYB101_col_a
0.789 0.815
MYB101
M07052_2.00
Arabidopsis thaliana
DHHHVTAACYGWHWN

NWDWCRGTTABDDDH
Dap-seq
OMalley et al.(2016)
MYB101_colamp_a
0.789 0.815
AtMYB81
M07049_2.00
Arabidopsis thaliana
VTAACNGHWWH

DWWDCNGTTAB
Dap-seq
OMalley et al.(2016)
MYB81_col_a
0.675 0.750
AtMYB81
M07050_2.00
Arabidopsis thaliana
DHHNYAACBGHWWH

DWWDCVGTTRNDDH
Dap-seq
OMalley et al.(2016)
MYB81_colamp_a
0.675 0.750
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OMERI01G31990.1 Myb 45 92
OMERI01G31990.1 Myb 98 142
OMERI01G31990.2 Myb 45 92
OMERI01G31990.2 Myb 98 142
OMERI01G31990.3 Myb 45 92
OMERI01G31990.3 Myb 98 142
OMERI01G31990.4 Myb 45 92
OMERI01G31990.4 Myb 98 142

Links

Other Myb/SANT family TFs
Other Oryza meridionalis TFs

Invalid Input OrderBy

283 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action