ONIVA06G24230 (Oryza nivara)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 ONIVA06G24230 T276330_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Gam1
M02703_2.00
Hordeum vulgare
NVYAACSGMC

GKCSGTTRBN
SELEX
Mathelier et al.(2014)
MA0034.1
0.700 0.728
Gam1
M11061_2.00
Hordeum vulgare
YAACSRHM

KDYSGTTR
Transfac
Matys et al.(2006)
P$GAMYB_01
0.700 0.728
GAM1_ORYSI
M11055_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$GAMYB_Q2
0.700 0.728
myb.Ph3
M02704_2.00
Petunia x hybrida
WAACNGTYW

WRACNGTTW
SELEX
Mathelier et al.(2014)
MA0054.1
0.694 0.761
myb.Ph3
M11070_2.00
Petunia x hybrida
RTAACSGTTTYHW

WDRAAACSGTTAY
Transfac
Matys et al.(2006)
P$MYBPH3_01
0.694 0.761
myb.Ph3
M11071_2.00
Petunia x hybrida
STAACTAACTHHH

DDDAGTTAGTTAS
Transfac
Matys et al.(2006)
P$MYBPH3_02
0.694 0.761
MYB101
M07051_2.00
Arabidopsis thaliana
NWHHNWAACCGWWHH

DDWWCGGTTWNDDWN
Dap-seq
OMalley et al.(2016)
MYB101_col_a
0.690 0.739
MYB101
M07052_2.00
Arabidopsis thaliana
DHHHVTAACYGWHWN

NWDWCRGTTABDDDH
Dap-seq
OMalley et al.(2016)
MYB101_colamp_a
0.690 0.739
Q9FR42_TOBAC
M11076_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MYBAS1_01
0.686 0.739
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ONIVA06G24230.1 Myb 211 258
ONIVA06G24230.1 Myb 264 308
ONIVA06G24230.2 Myb 243 290
ONIVA06G24230.2 Myb 296 340
ONIVA06G24230.4 Myb 78 125
ONIVA06G24230.4 Myb 131 175
ONIVA06G24230.5 Myb 78 125
ONIVA06G24230.5 Myb 131 175

Links

Other Myb/SANT family TFs
Other Oryza nivara TFs

219 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
OMERI06G21070 Oryza meridionalis OMERI06G21070 I 0.909
ORGLA06G0168900 Oryza glaberrima ORGLA06G0168900 I 0.909
OBART06G20450 Oryza barthii OBART06G20450 I 0.909
ORUFI06G21880 Oryza rufipogon ORUFI06G21880 I 0.909
OGLUM06G21530 Oryza glumaepatula OGLUM06G21530 I 0.909
OLONG_019401 Oryza longistaminata OLONG_019401 I 0.884
OPUNC06G18670 Oryza punctata OPUNC06G18670 I 0.841
LPERR06G17110 Leersia perrieri LPERR06G17110 N 0.790
TRIUR3_15006 Triticum urartu TRIUR3_15006 I 0.787
Pavir.Da00534 Panicum virgatum Pavir.Da00534 I 0.779
Si007070m.g Setaria italica Si007070m.g I 0.779
Sb10g023665 Sorghum bicolor Sb10g023665 I 0.779
F775_08967 Aegilops tauschii F775_08967 I 0.776
orange1.1g011938m.g Citrus sinensis orange1.1g011938m.g I 0.721
Ciclev10000756m.g Citrus clementina Ciclev10000756m.g I 0.721
Lus10040063.g Linum usitatissimum Lus10040063.g I 0.714
Bra005597 Brassica rapa Bra005597 I 0.714
Bo4g046000 Brassica oleracea Bo4g046000 I 0.714
Lus10021539.g Linum usitatissimum Lus10021539.g I 0.714
OS06G0605750 Oryza sativa OS06G0605750 N 0.713
GLYMA13G38521 Glycine max GLYMA13G38521 I 0.709
GLYMA12G31950 Glycine max GLYMA12G31950 I 0.709
Ca_07119 Cicer arietinum Ca_07119 I 0.709
MTR_2g088170 Medicago truncatula MTR_2g088170 I 0.709
GLYMA18G10921 Glycine max GLYMA18G10921 I 0.706
PRUPE_ppa019943mg Prunus persica PRUPE_ppa019943mg I 0.706
LjT02G13.10.nc Lotus japonicus LjT02G13.10.nc I 0.706
Ca_20081 Cicer arietinum Ca_20081 I 0.706
Eucgr.A01122 Eucalyptus grandis Eucgr.A01122 I 0.704
GLYMA06G47000 Glycine max GLYMA06G47000 I 0.702
MTR_3g052450 Medicago truncatula MTR_3g052450 I 0.702
MTR_3g052430 Medicago truncatula MTR_3g052430 I 0.702
OGLUM01G20920 Oryza glumaepatula OGLUM01G20920 I 0.700
OLONG_020610 Oryza longistaminata OLONG_020610 I 0.700
OMERI01G31990 Oryza meridionalis OMERI01G31990 I 0.700
OBART01G34660 Oryza barthii OBART01G34660 I 0.700
Pavir.Ea03206 Panicum virgatum Pavir.Ea03206 I 0.700
OB01G43550 Oryza brachyantha OB01G43550 I 0.700
GAMYB Oryza sativa OS01G0812000 I 0.700
GAM1_ORYSI Oryza sativa GAM1_ORYSI D 0.700
GRMZM2G139688 Zea mays GRMZM2G139688 I 0.700
GAM1 Oryza indica BGIOSGA004670 I 0.700
TRAES3BF027700010CFD_g Triticum aestivum TRAES3BF027700010CFD_g I 0.700
TRIUR3_27104 Triticum urartu TRIUR3_27104 I 0.700
Pm015094 Prunus mume Pm015094 I 0.700
TCM_041010 Theobroma cacao TCM_041010 I 0.700
BRADI2G53010 Brachypodium distachyon BRADI2G53010 I 0.700
PRUPE_ppa017451mg Prunus persica PRUPE_ppa017451mg I 0.700
F775_28392 Aegilops tauschii F775_28392 I 0.700
Gam1 Hordeum vulgare Q96464_HORVU D 0.700
Si000907m.g Setaria italica Si000907m.g I 0.700
AMTR_s00037p00177500 Amborella trichopoda AMTR_s00037p00177500 I 0.697
mgf002965m Mimulus guttatus mgf002965m I 0.697
VIT_19s0090g00590 Vitis vinifera VIT_19s0090g00590 I 0.697
Ca_25013 Cicer arietinum Ca_25013 I 0.697
gene03321-v1.0-hybrid Fragaria vesca gene03321-v1.0-hybrid I 0.696
MDP0000179306 Malus domestica MDP0000179306 I 0.696
MDP0000308617 Malus domestica MDP0000308617 I 0.696
Cla005406 Citrullus lanatus Cla005406 I 0.696
Cucsa.060080 Cucumis sativus Cucsa.060080 I 0.696
PRUPE_ppa022465mg Prunus persica PRUPE_ppa022465mg I 0.696
GLYMA08G42920 Glycine max GLYMA08G42920 I 0.696
PGSC0003DMG400028949 Solanum tuberosum PGSC0003DMG400028949 I 0.694
myb.Ph3 Petunia x hybrida Q02994_PETHY D 0.694
Solyc07g052300.2 Solanum lycopersicum Solyc07g052300.2 I 0.694
LPERR05G16930 Leersia perrieri LPERR05G16930 I 0.692
cassava40302.m1 Manihot esculenta cassava40302.m1 I 0.692
cassava11031.m1 Manihot esculenta cassava11031.m1 I 0.692
PGSC0003DMG400022689 Solanum tuberosum PGSC0003DMG400022689 I 0.692
29823.m000215 Ricinus communis 29823.m000215 I 0.692
Solyc01g009070.2 Solanum lycopersicum Solyc01g009070.2 I 0.692
Gorai.013G159200 Gossypium raimondii Gorai.013G159200 I 0.691
29785.m000932 Ricinus communis 29785.m000932 I 0.691
Lus10008685.g Linum usitatissimum Lus10008685.g I 0.691
29686.m000890 Ricinus communis 29686.m000890 I 0.691
Aquca_014_00928 Aquilegia coerulea Aquca_014_00928 I 0.691
mgf010934m Mimulus guttatus mgf010934m I 0.691
TCM_044611 Theobroma cacao TCM_044611 I 0.691
Lus10026142.g Linum usitatissimum Lus10026142.g I 0.691
cassava30977.valid.m1 Manihot esculenta cassava30977.valid.m1 I 0.691
cassava44767.m1 Manihot esculenta cassava44767.m1 I 0.691
Cucsa.364400 Cucumis sativus Cucsa.364400 I 0.691
mgf019173m Mimulus guttatus mgf019173m I 0.691
GLYMA08G42955 Glycine max GLYMA08G42955 I 0.691
Solyc06g073640.2 Solanum lycopersicum Solyc06g073640.2 I 0.691
mgf025568m Mimulus guttatus mgf025568m I 0.691
Ciclev10010620m.g Citrus clementina Ciclev10010620m.g I 0.691
orange1.1g046419m.g Citrus sinensis orange1.1g046419m.g I 0.691
gene03323-v1.0-hybrid Fragaria vesca gene03323-v1.0-hybrid I 0.691
AMTR_s00038p00150140 Amborella trichopoda AMTR_s00038p00150140 I 0.691
evm.TU.supercontig_33.151 Carica papaya evm.TU.supercontig_33.151 I 0.691
SapurV1A.0537s0200 Salix purpurea SapurV1A.0537s0200 I 0.691
SapurV1A.0369s0230 Salix purpurea SapurV1A.0369s0230 I 0.691
SapurV1A.0008s0050 Salix purpurea SapurV1A.0008s0050 I 0.691
Gorai.012G022000 Gossypium raimondii Gorai.012G022000 I 0.691
Gorai.010G212500 Gossypium raimondii Gorai.010G212500 I 0.691
PDK_20s1831811g001 Phoenix dactylifera PDK_20s1831811g001 I 0.691
GSMUA_Achr1G17150_001 Musa acuminata GSMUA_Achr1G17150_001 I 0.691
VIT_13s0067g01630 Vitis vinifera VIT_13s0067g01630 I 0.691
POPTR_0009s02380 Populus trichocarpa POPTR_0009s02380 I 0.691
cassava1461.valid.m1 Manihot esculenta cassava1461.valid.m1 I 0.691
Cla013880 Citrullus lanatus Cla013880 I 0.691
POPTR_0003s18900 Populus trichocarpa POPTR_0003s18900 I 0.691
PGSC0003DMG400013897 Solanum tuberosum PGSC0003DMG400013897 I 0.691
POPTR_0001s07330 Populus trichocarpa POPTR_0001s07330 I 0.691
PGSC0003DMG400005918 Solanum tuberosum PGSC0003DMG400005918 I 0.691
MDP0000175835 Malus domestica MDP0000175835 I 0.690
Bo3g026690 Brassica oleracea Bo3g026690 I 0.690
chr3.CM0005.370.nc Lotus japonicus chr3.CM0005.370.nc I 0.690
Carubv10025227m.g Capsella rubella Carubv10025227m.g I 0.690
Ciclev10014958m.g Citrus clementina Ciclev10014958m.g I 0.690
MYB101 Arabidopsis thaliana AT2G32460 D 0.690
gene23946-v1.0-hybrid Fragaria vesca gene23946-v1.0-hybrid I 0.690
Gorai.006G121900 Gossypium raimondii Gorai.006G121900 I 0.690
Carubv10026070m.g Capsella rubella Carubv10026070m.g I 0.690
Cagra.1629s0073 Capsella grandiflora Cagra.1629s0073 I 0.690
Bostr.23794s0867 Boechera stricta Bostr.23794s0867 I 0.690
Bostr.26833s0761 Boechera stricta Bostr.26833s0761 I 0.690
Cagra.0352s0034 Capsella grandiflora Cagra.0352s0034 I 0.690
ATMYB120 Arabidopsis thaliana AT5G55020 I 0.690
Bo9g119060 Brassica oleracea Bo9g119060 I 0.690
SapurV1A.2567s0040 Salix purpurea SapurV1A.2567s0040 I 0.690
Thhalv10013018m.g Eutrema salsugineum Thhalv10013018m.g I 0.690
Bra021791 Brassica rapa Bra021791 I 0.690
Lus10035275.g Linum usitatissimum Lus10035275.g I 0.690
TCM_011907 Theobroma cacao TCM_011907 I 0.690
orange1.1g039708m.g Citrus sinensis orange1.1g039708m.g I 0.690
MDP0000151688 Malus domestica MDP0000151688 I 0.690
MYB101 Arabidopsis lyrata fgenesh2_kg.4__1233__AT2G32460.2 I 0.690
SapurV1A.1897s0070 Salix purpurea SapurV1A.1897s0070 I 0.690
Bra002938 Brassica rapa Bra002938 I 0.690
MDP0000176798 Malus domestica MDP0000176798 I 0.690
Lus10027189.g Linum usitatissimum Lus10027189.g I 0.690
Thhalv10016567m.g Eutrema salsugineum Thhalv10016567m.g I 0.690
Pavir.Eb03517 Panicum virgatum Pavir.Eb03517 I 0.689
Bo4g178040 Brassica oleracea Bo4g178040 I 0.689
MTR_8g042410 Medicago truncatula MTR_8g042410 I 0.688
Eucgr.G03183 Eucalyptus grandis Eucgr.G03183 I 0.688
gene00431-v1.0-hybrid Fragaria vesca gene00431-v1.0-hybrid I 0.688
GLYMA15G35860 Glycine max GLYMA15G35860 I 0.688
GLYMA13G25716 Glycine max GLYMA13G25716 I 0.688
MDP0000147309 Malus domestica MDP0000147309 I 0.688
PRUPE_ppa003628mg Prunus persica PRUPE_ppa003628mg I 0.688
SapurV1A.1951s0020 Salix purpurea SapurV1A.1951s0020 I 0.688
Pm016605 Prunus mume Pm016605 I 0.688
Aquca_005_00025 Aquilegia coerulea Aquca_005_00025 I 0.687
TCM_030853 Theobroma cacao TCM_030853 I 0.687
MYB101 Vitis vinifera VIT_12s0059g00700 I 0.687
Gorai.002G089900 Gossypium raimondii Gorai.002G089900 I 0.687
Lus10036103.g Linum usitatissimum Lus10036103.g I 0.686
Q9FR42_TOBAC Nicotiana tabacum Q9FR42_TOBAC D 0.686
VIT_06s0009g02480 Vitis vinifera VIT_06s0009g02480 I 0.686
Gorai.009G301100 Gossypium raimondii Gorai.009G301100 I 0.686
Lus10026787.g Linum usitatissimum Lus10026787.g I 0.686
mgf020500m Mimulus guttatus mgf020500m I 0.686
PK15478.1 Cannabis sativa PK15478.1 I 0.684
MYB33 Arabidopsis lyrata fgenesh2_kg.6__546__AT5G06100.3 I 0.684
LjSGA_026914.2 Lotus japonicus LjSGA_026914.2 I 0.683
GLYMA04G15150 Glycine max GLYMA04G15150 I 0.682
evm.TU.supercontig_34.210 Carica papaya evm.TU.supercontig_34.210 I 0.681
SELMODRAFT_84369 Selaginella moellendorffii SELMODRAFT_84369 I 0.681
Cla007782 Citrullus lanatus Cla007782 I 0.681
SELMODRAFT_81112 Selaginella moellendorffii SELMODRAFT_81112 I 0.681
Cucsa.148580 Cucumis sativus Cucsa.148580 I 0.681
SELMODRAFT_128781 Selaginella moellendorffii SELMODRAFT_128781 I 0.681
SELMODRAFT_117411 Selaginella moellendorffii SELMODRAFT_117411 I 0.681
Thhalv10013329m.g Eutrema salsugineum Thhalv10013329m.g I 0.680
Carubv10000715m.g Capsella rubella Carubv10000715m.g I 0.680
Bostr.13129s0364 Boechera stricta Bostr.13129s0364 I 0.680
MTR_3g011610 Medicago truncatula MTR_3g011610 I 0.680
Cagra.2117s0052 Capsella grandiflora Cagra.2117s0052 I 0.680
SapurV1A.0014s1240 Salix purpurea SapurV1A.0014s1240 I 0.678
gw1.66.160.1 Physcomitrella patens gw1.66.160.1 I 0.678
gw1.238.44.1 Physcomitrella patens gw1.238.44.1 I 0.678
GSMUA_Achr4G23690_001 Musa acuminata GSMUA_Achr4G23690_001 I 0.677
Bra035547 Brassica rapa Bra035547 I 0.677
Gorai.007G312700 Gossypium raimondii Gorai.007G312700 I 0.677
Sb10g027280 Sorghum bicolor Sb10g027280 I 0.675
Si006555m.g Setaria italica Si006555m.g I 0.675
Pavir.Db00593 Panicum virgatum Pavir.Db00593 I 0.675
Bra022888 Brassica rapa Bra022888 I 0.674
Sb03g037680 Sorghum bicolor Sb03g037680 I 0.673
TRIUR3_17275 Triticum urartu TRIUR3_17275 I 0.673
Traes_1BL_CF98E922B Triticum aestivum Traes_1BL_CF98E922B I 0.673
Ca_21739 Cicer arietinum Ca_21739 I 0.670
MYB101 Populus trichocarpa POPTR_0002s21300 I 0.670
LjSGA_010688.1 Lotus japonicus LjSGA_010688.1 I 0.667
Traes_2AL_41B71F83C Triticum aestivum Traes_2AL_41B71F83C I 0.667
BRADI5G16707 Brachypodium distachyon BRADI5G16707 I 0.667
ORGLA04G0169000 Oryza glaberrima ORGLA04G0169000 I 0.667
ONIVA04G17990 Oryza nivara ONIVA04G17990 I 0.667
MLOC_68698 Hordeum vulgare MLOC_68698 I 0.667
ORUFI04G21320 Oryza rufipogon ORUFI04G21320 I 0.667
Bra012038 Brassica rapa Bra012038 I 0.667
Traes_2DL_5A0300CE0 Triticum aestivum Traes_2DL_5A0300CE0 I 0.667
Traes_2BL_79F1B50DF Triticum aestivum Traes_2BL_79F1B50DF I 0.667
Sb06g023620 Sorghum bicolor Sb06g023620 I 0.667
BGIOSGA016822 Oryza indica BGIOSGA016822 I 0.667
OB04G26860 Oryza brachyantha OB04G26860 I 0.667
GSMUA_AchrUn_randomG15100_001 Musa acuminata GSMUA_AchrUn_randomG15100_001 I 0.666
MTR_1g021230 Medicago truncatula MTR_1g021230 I 0.666
LjSGA_057622.2 Lotus japonicus LjSGA_057622.2 I 0.665
Bo4g076940 Brassica oleracea Bo4g076940 I 0.664
OBART05G21120 Oryza barthii OBART05G21120 I 0.664
Bo1g141040 Brassica oleracea Bo1g141040 I 0.664
BGIOSGA017818 Oryza indica BGIOSGA017818 I 0.664
OS05G0490600 Oryza sativa OS05G0490600 I 0.664
ORUFI05G22370 Oryza rufipogon ORUFI05G22370 I 0.664
Bra002042 Brassica rapa Bra002042 I 0.664
OPUNC05G18800 Oryza punctata OPUNC05G18800 I 0.664
Pm011812 Prunus mume Pm011812 I 0.664
Pavir.Da00077 Panicum virgatum Pavir.Da00077 I 0.664
OGLUM05G22330 Oryza glumaepatula OGLUM05G22330 I 0.664
Thhalv10025350m.g Eutrema salsugineum Thhalv10025350m.g I 0.663
MYB97 Arabidopsis thaliana AT4G26930 I 0.661
MYB97 Arabidopsis lyrata fgenesh2_kg.7__1539__AT4G26930.1 I 0.661
Bo3g021790 Brassica oleracea Bo3g021790 I 0.661
Bra028997 Brassica rapa Bra028997 I 0.661