ONIVA09G02600 (Oryza nivara)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 ONIVA09G02600 T276368_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AT3G24120
M00729_2.00
Arabidopsis thaliana
NNKATDCBNN

NNVGHATMNN
PBM
Chang et al.(2013)
pTH7086
0.809 0.872
UNE16
M01270_2.00
Arabidopsis thaliana
NWKATTCBNN

NNVGAATMWN
PBM
Lambert et al.(2019)
pTH9967
0.809 0.872
AT3G24120
M07085_2.00
Arabidopsis thaliana
HAKATTCB

VGAATMTD
Dap-seq
OMalley et al.(2016)
At3g24120_col_a
0.809 0.872
AT3G24120
M07086_2.00
Arabidopsis thaliana
NDRAAKATTCBHHN

NDDVGAATMTTYHN
Dap-seq
OMalley et al.(2016)
At3g24120_colamp_a
0.809 0.872
PHL11
M07134_2.00
Arabidopsis thaliana
NNRAAKATTCYHHN

NDDRGAATMTTYNN
Dap-seq
OMalley et al.(2016)
AT5G45580_col_a
0.757 0.830
PHL11
M07135_2.00
Arabidopsis thaliana
NRAAKATTCYHHNN

NNDDRGAATMTTYN
Dap-seq
OMalley et al.(2016)
AT5G45580_colamp_a
0.757 0.830
MYR1
M02309_2.00
Arabidopsis thaliana
NKATNCBNNN

NNNVGNATMN
PBM
Weirauch et al.(2014)
pTH8859
0.743 0.809
MYR2
M02294_2.00
Arabidopsis thaliana
NKATDCBNN

NNVGHATMN
PBM
Weirauch et al.(2014)
pTH7097
0.737 0.787
MYR2
M07063_2.00
Arabidopsis thaliana
NNDAAKATTCYHHN

NDDRGAATMTTHNN
Dap-seq
OMalley et al.(2016)
At3g04030_col_a
0.737 0.787
MYR2
M07064_2.00
Arabidopsis thaliana
VRAAKATTCBHWNNN

NNNWDVGAATMTTYB
Dap-seq
OMalley et al.(2016)
At3g04030_colamp_a
0.737 0.787
PHL12
M01077_2.00
Arabidopsis thaliana
NWKATTCBNN

NNVGAATMWN
PBM
Sullivan et al.(2014)
pTH7098
0.731 0.830
PHL12
M07079_2.00
Arabidopsis thaliana
RGAATATTCYYTWN

NWARRGAATATTCY
Dap-seq
OMalley et al.(2016)
At3g12730_col_a
0.731 0.830
PHL12
M07080_2.00
Arabidopsis thaliana
NNRAAKATTCBHHN

NDDVGAATMTTYNN
Dap-seq
OMalley et al.(2016)
At3g12730_colamp_a
0.731 0.830
PHL7
M02292_2.00
Arabidopsis thaliana
NWGATDCBNN

NNVGHATCWN
PBM
Weirauch et al.(2014)
pTH7253
0.720 0.787
PK10342.1
M02351_2.00
Cannabis sativa
WAGATKCS

SGMATCTW
PBM
Weirauch et al.(2014)
pTH9489
0.720 0.787
PHL7
M07040_2.00
Arabidopsis thaliana
DRNAKATTCBNHNNN

NNNDNVGAATMTNYH
Dap-seq
OMalley et al.(2016)
At2g01060_colamp_a
0.720 0.787
PHL7
M07041_2.00
Arabidopsis thaliana
VGAATATTCBNHH

DDNVGAATATTCB
Dap-seq
OMalley et al.(2016)
At2g01060_col
0.720 0.787
Q5IWM2_WHEAT
M11059_2.00
Triticum aestivum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MYB80_01
0.666 0.745
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ONIVA09G02600.1 Myb 36 68
ONIVA09G02600.1 Myb 197 252
ONIVA09G02600.2 Myb 36 87

Links

Other Myb/SANT family TFs
Other Oryza nivara TFs

685 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
LPERR02G10380 Leersia perrieri LPERR02G10380 N 0.000
LPERR02G10620 Leersia perrieri LPERR02G10620 N 0.000
LPERR02G10770 Leersia perrieri LPERR02G10770 N 0.000
OBART08G15340 Oryza barthii OBART08G15340 N 0.000
OBART03G24330 Oryza barthii OBART03G24330 N 0.000
OB03G33030 Oryza brachyantha OB03G33030 N 0.000
OB01G21750 Oryza brachyantha OB01G21750 N 0.000
ORGLA03G0226500 Oryza glaberrima ORGLA03G0226500 N 0.000
OGLUM03G25150 Oryza glumaepatula OGLUM03G25150 N 0.000
OGLUM08G16100 Oryza glumaepatula OGLUM08G16100 N 0.000
BGIOSGA003304 Oryza indica BGIOSGA003304 N 0.000
OMERI08G12590 Oryza meridionalis OMERI08G12590 N 0.000
ONIVA01G14280 Oryza nivara ONIVA01G14280 N 0.000
ONIVA03G25700 Oryza nivara ONIVA03G25700 N 0.000
ONIVA08G16460 Oryza nivara ONIVA08G16460 N 0.000
OPUNC08G12800 Oryza punctata OPUNC08G12800 N 0.000
OPUNC03G22520 Oryza punctata OPUNC03G22520 N 0.000
OPUNC01G11730 Oryza punctata OPUNC01G11730 N 0.000
ORUFI01G13020 Oryza rufipogon ORUFI01G13020 N 0.000
ORUFI03G24940 Oryza rufipogon ORUFI03G24940 N 0.000
Pavir.J14267 Panicum virgatum Pavir.J14267 N 0.000