CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
OPUNC01G08000
(
Oryza punctata
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00249 (Myb_DNA-binding)
IPR014778
OPUNC01G08000
T276409_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PC-MYB1
M07110_2.00
Arabidopsis thaliana
NDWWNTDRCCGTTRN
NYAACGGYHANWWHN
Dap-seq
OMalley et al.(2016)
MYB3R1_col_a
0.754
0.799
PC-MYB1
M07111_2.00
Arabidopsis thaliana
DWHNTDRCCGTTR
YAACGGYHANDWH
Dap-seq
OMalley et al.(2016)
MYB3R1_colamp_a
0.754
0.799
Q948S5_TOBAC
M11074_2.00
Nicotiana tabacum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MYBA2_01
0.733
0.828
PK12011.1
M01279_2.00
Cannabis sativa
HAACGGHHNN
NNDDCCGTTD
PBM
Lambert et al.(2019)
pTH11423
0.715
0.836
MYB3R4
M07125_2.00
Arabidopsis thaliana
NDWWNTDRCCGTTRN
NYAACGGYHANWWHN
Dap-seq
OMalley et al.(2016)
MYB3R4_col_a
0.693
0.776
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
OPUNC01G08000.1
Myb
51
97
KGNWTPEEDAILSRAVQTYNGKNWKKIAECFPDRTDVQCLHRWQKVL
OPUNC01G08000.1
Myb
103
149
KGPWSKEEDDIIVQMVNKLGPKKWSTIAQALPGRIGKQCRERWYNHL
OPUNC01G08000.1
Myb
155
199
KEAWTQEEEITLVHAHRMYGNKWAELTKFLPGRTDNSIKNHWNSS
OPUNC01G08000.2
Myb
51
92
KGNWTPEEDAILSRAVQTYNGKNWKKIDRTDVQCLHRWQKVL
OPUNC01G08000.2
Myb
98
144
KGPWSKEEDDIIVQMVNKLGPKKWSTIAQALPGRIGKQCRERWYNHL
OPUNC01G08000.2
Myb
150
194
KEAWTQEEEITLVHAHRMYGNKWAELTKFLPGRTDNSIKNHWNSS
Links
Other
Myb/SANT
family TFs
Other
Oryza punctata
TFs
140 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy