CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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PGSC0003DMG400006930
(
Solanum tuberosum
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00249 (Myb_DNA-binding)
IPR014778
PGSC0003DMG400006930
T277555_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ATY13
M07035_2.00
Arabidopsis thaliana
HAMCHMCCAMCHAHH
DDTDGKTGGKDGKTD
Dap-seq
OMalley et al.(2016)
ATY13_col_a
0.845
0.871
ATY13
M07036_2.00
Arabidopsis thaliana
HAMCHHCCAACHAHH
DDTDGTTGGDDGKTD
Dap-seq
OMalley et al.(2016)
ATY13_colamp_a
0.845
0.871
MYB94
M02298_2.00
Arabidopsis thaliana
DACCGGTH
DACCGGTH
PBM
Weirauch et al.(2014)
pTH7085
0.822
0.871
MYB94
M07094_2.00
Arabidopsis thaliana
HHNYHYCAACYACYWHHNN
NNDDWRGTRGTTGRDRNDD
Dap-seq
OMalley et al.(2016)
MYB94_col_b
0.822
0.871
MYB60
M07001_2.00
Arabidopsis thaliana
HNNHYYCAACYACYWHHNN
NNDDWRGTRGTTGRRDNND
Dap-seq
OMalley et al.(2016)
MYB60_col
0.818
0.860
MYB30
M07089_2.00
Arabidopsis thaliana
NHHHCAACYACYWHH
DDWRGTRGTTGDDDN
Dap-seq
OMalley et al.(2016)
MYB30_col_a
0.816
0.860
MYB30
M07090_2.00
Arabidopsis thaliana
HHHYYHCCAACYAMY
RKTRGTTGGDRRDDD
Dap-seq
OMalley et al.(2016)
MYB30_colamp_a
0.816
0.860
MYB96
M07153_2.00
Arabidopsis thaliana
HHHHHYHHCCAACYAHYWNHN
NDNWRDTRGTTGGDDRDDDDD
Dap-seq
OMalley et al.(2016)
MYB96_colamp_a
0.798
0.860
MYB96
M07154_2.00
Arabidopsis thaliana
YAMCHNCCAMCHAHHHHH
DDDDDTDGKTGGNDGKTR
Dap-seq
OMalley et al.(2016)
MYB96_col_b
0.798
0.860
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
PGSC0003DMT400017844
Myb
14
61
KGPWTPEEDIILVSYVQQHGPGNWRALPTKTGLHRCSKSCRLRWTNYL
PGSC0003DMT400017844
Myb
67
112
RGNFTDQEEKMIIQLQALLGNKWAAIASYLPERTDNDIKNYWNTYL
PGSC0003DMT400017845
Myb
14
61
KGPWTPEEDIILVSYVQQHGPGNWRALPTKTGLHRCSKSCRLRWTNYL
PGSC0003DMT400017845
Myb
67
112
RGNFTDQEEKMIIQLQALLGNKWAAIASYLPERTDNDIKNYWNTYL
Links
Other
Myb/SANT
family TFs
Other
Solanum tuberosum
TFs
310 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy