PGSC0003DMG400008532 (Solanum tuberosum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 PGSC0003DMG400008532 T277571_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAX3
M02700_2.00 		Arabidopsis thaliana
SCACCTACCHCCN
NGGDGGTAGGTGS		 SELEX
Mathelier et al.(2014)
MA0576.1 		0.662 0.656
RAX3
M11043_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ATMYB84_01 		0.662 0.656
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400022009 Myb 14 61
PGSC0003DMT400022009 Myb 67 112

Links

Other Myb/SANT family TFs
Other Solanum tuberosum TFs

123 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Solyc03g059200.1 Solanum lycopersicum Solyc03g059200.1 I 0.909
mgf012871m Mimulus guttatus mgf012871m I 0.844
PDK_20s1379331g001 Phoenix dactylifera PDK_20s1379331g001 I 0.782
ATMYB35 Vitis vinifera VIT_14s0066g02180 N 0.777
cassava41279.m1 Manihot esculenta cassava41279.m1 N 0.773
Lus10005834.g Linum usitatissimum Lus10005834.g N 0.772
Lus10039462.g Linum usitatissimum Lus10039462.g N 0.772
cassava27944.m1 Manihot esculenta cassava27944.m1 N 0.769
PDK_20s1406481g002 Phoenix dactylifera PDK_20s1406481g002 N 0.756
ATMYB35 Populus trichocarpa POPTR_0017s11140 N 0.751
GSMUA_Achr3G10060_001 Musa acuminata GSMUA_Achr3G10060_001 I 0.751
MDP0000258046 Malus domestica MDP0000258046 N 0.748
Eucgr.I02017 Eucalyptus grandis Eucgr.I02017 I 0.746
TCM_018082 Theobroma cacao TCM_018082 N 0.744
Cucsa.339230 Cucumis sativus Cucsa.339230 N 0.742
Ca_10555 Cicer arietinum Ca_10555 N 0.734
MTR_6g009430 Medicago truncatula MTR_6g009430 N 0.734
VIT_17s0000g05400 Vitis vinifera VIT_17s0000g05400 I 0.732
LPERR03G12200 Leersia perrieri LPERR03G12200 I 0.728
cassava26191.m1 Manihot esculenta cassava26191.m1 N 0.723
Aquca_025_00152 Aquilegia coerulea Aquca_025_00152 N 0.720
OGLUM03G13980 Oryza glumaepatula OGLUM03G13980 I 0.719
OBART03G13840 Oryza barthii OBART03G13840 I 0.719
OMERI03G12640 Oryza meridionalis OMERI03G12640 I 0.719
ONIVA03G15100 Oryza nivara ONIVA03G15100 I 0.719
ORUFI03G14500 Oryza rufipogon ORUFI03G14500 I 0.719
ORGLA03G0133600 Oryza glaberrima ORGLA03G0133600 I 0.719
OB03G23760 Oryza brachyantha OB03G23760 I 0.719
OPUNC03G13320 Oryza punctata OPUNC03G13320 I 0.719
GLYMA13G04920 Glycine max GLYMA13G04920 I 0.716
Pavir.Db01456 Panicum virgatum Pavir.Db01456 I 0.711
GRMZM2G308034 Zea mays GRMZM2G308034 I 0.711
Sb01g038250 Sorghum bicolor Sb01g038250 I 0.711
PRUPE_ppa015976mg Prunus persica PRUPE_ppa015976mg N 0.709
evm.TU.contig_28309.2 Carica papaya evm.TU.contig_28309.2 I 0.708
gene01311-v1.0-hybrid Fragaria vesca gene01311-v1.0-hybrid N 0.708
Cucsa.197410 Cucumis sativus Cucsa.197410 N 0.707
SapurV1A.1048s0030 Salix purpurea SapurV1A.1048s0030 I 0.707
GLYMA19G02090 Glycine max GLYMA19G02090 I 0.707
Ciclev10023930m.g Citrus clementina Ciclev10023930m.g N 0.705
BGIOSGA010923 Oryza indica BGIOSGA010923 I 0.702
POPTR_0015s07900 Populus trichocarpa POPTR_0015s07900 N 0.699
VIT_04s0008g00620 Vitis vinifera VIT_04s0008g00620 I 0.697
GSMUA_Achr4G25260_001 Musa acuminata GSMUA_Achr4G25260_001 I 0.696
Cla008857 Citrullus lanatus Cla008857 I 0.692
Pm015813 Prunus mume Pm015813 N 0.692
AMTR_s00133p00071910 Amborella trichopoda AMTR_s00133p00071910 I 0.690
F775_14388 Aegilops tauschii F775_14388 I 0.689
Traes_4AS_4EFBA88E4 Triticum aestivum Traes_4AS_4EFBA88E4 I 0.689
Traes_4DL_DFCF4A15A Triticum aestivum Traes_4DL_DFCF4A15A I 0.689
Traes_4BL_532725AD5 Triticum aestivum Traes_4BL_532725AD5 I 0.689
Bra017963 Brassica rapa Bra017963 I 0.688
Bo8g078940 Brassica oleracea Bo8g078940 I 0.688
Ciclev10010621m.g Citrus clementina Ciclev10010621m.g I 0.685
orange1.1g045583m.g Citrus sinensis orange1.1g045583m.g I 0.685
Gorai.010G139300 Gossypium raimondii Gorai.010G139300 N 0.685
TCM_045715 Theobroma cacao TCM_045715 N 0.685
Pavir.J15551 Panicum virgatum Pavir.J15551 I 0.683
Pavir.J11789 Panicum virgatum Pavir.J11789 I 0.683
POPTR_0012s07450 Populus trichocarpa POPTR_0012s07450 N 0.681
ORUFI05G26880 Oryza rufipogon ORUFI05G26880 I 0.680
LPERR05G20870 Leersia perrieri LPERR05G20870 I 0.680
GRMZM2G069325 Zea mays GRMZM2G069325 I 0.680
Si022874m.g Setaria italica Si022874m.g I 0.680
OS05G0553400 Oryza sativa OS05G0553400 I 0.680
ORGLA05G0216200 Oryza glaberrima ORGLA05G0216200 I 0.680
Sb09g027800 Sorghum bicolor Sb09g027800 I 0.680
BGIOSGA017601 Oryza indica BGIOSGA017601 I 0.680
Bra025337 Brassica rapa Bra025337 N 0.679
Bo7g091360 Brassica oleracea Bo7g091360 N 0.679
Thhalv10005502m.g Eutrema salsugineum Thhalv10005502m.g N 0.679
Ciclev10009336m.g Citrus clementina Ciclev10009336m.g I 0.677
orange1.1g037024m.g Citrus sinensis orange1.1g037024m.g I 0.677
SapurV1A.0161s0110 Salix purpurea SapurV1A.0161s0110 N 0.676
Ciclev10013340m.g Citrus clementina Ciclev10013340m.g I 0.674
orange1.1g043557m.g Citrus sinensis orange1.1g043557m.g I 0.674
mgf021409m Mimulus guttatus mgf021409m I 0.673
Cucsa.306690 Cucumis sativus Cucsa.306690 I 0.671
Lus10033119.g Linum usitatissimum Lus10033119.g N 0.671
Cla018072 Citrullus lanatus Cla018072 I 0.671
Lus10036660.g Linum usitatissimum Lus10036660.g N 0.671
BRADI2G17280 Brachypodium distachyon BRADI2G17280 N 0.671
Cucsa.385830 Cucumis sativus Cucsa.385830 I 0.670
PRUPE_ppa017571mg Prunus persica PRUPE_ppa017571mg N 0.669
AMTR_s00056p00204920 Amborella trichopoda AMTR_s00056p00204920 I 0.669
Eucgr.C02280 Eucalyptus grandis Eucgr.C02280 I 0.669
Eucgr.C02391 Eucalyptus grandis Eucgr.C02391 I 0.669
Pm024633 Prunus mume Pm024633 N 0.669
Traes_7AL_5B57EF9FC Triticum aestivum Traes_7AL_5B57EF9FC I 0.668
Traes_7DL_20EC9096A Triticum aestivum Traes_7DL_20EC9096A I 0.668
GLYMA17G16980 Glycine max GLYMA17G16980 I 0.668
MLOC_44167 Hordeum vulgare MLOC_44167 I 0.668
TCM_037245 Theobroma cacao TCM_037245 I 0.667
Lus10016139.g Linum usitatissimum Lus10016139.g I 0.667
Lus10021428.g Linum usitatissimum Lus10021428.g I 0.667
Thhalv10010576m.g Eutrema salsugineum Thhalv10010576m.g I 0.667
POPTR_0006s25060 Populus trichocarpa POPTR_0006s25060 I 0.667
Cla019436 Citrullus lanatus Cla019436 N 0.665
GLYMA17G35020 Glycine max GLYMA17G35020 I 0.665
GLYMA14G10483 Glycine max GLYMA14G10483 I 0.665
SapurV1A.0138s0120 Salix purpurea SapurV1A.0138s0120 N 0.662
Bra024419 Brassica rapa Bra024419 I 0.662
Bra031847 Brassica rapa Bra031847 I 0.662
Bo9g018910 Brassica oleracea Bo9g018910 I 0.662
Bo3g097710 Brassica oleracea Bo3g097710 I 0.662
ATMYB68 Arabidopsis thaliana AT5G65790 I 0.662
RAX3 Arabidopsis thaliana AT3G49690 D 0.662
Carubv10017650m.g Capsella rubella Carubv10017650m.g N 0.662
Bo2g168190 Brassica oleracea Bo2g168190 I 0.662
Thhalv10005299m.g Eutrema salsugineum Thhalv10005299m.g I 0.662
ATMYB35 Arabidopsis lyrata fgenesh2_kg.5__614__AT3G28470.1 N 0.662
Cagra.2310s0015 Capsella grandiflora Cagra.2310s0015 N 0.662
Bostr.0556s0504 Boechera stricta Bostr.0556s0504 N 0.662
Lus10001316.g Linum usitatissimum Lus10001316.g I 0.662
RAX3 Arabidopsis lyrata Al_scaffold_0005_1808 I 0.662
mgf021784m Mimulus guttatus mgf021784m I 0.662
Lus10006978.g Linum usitatissimum Lus10006978.g I 0.662
Bostr.0568s0206 Boechera stricta Bostr.0568s0206 I 0.662
Cagra.0917s0007 Capsella grandiflora Cagra.0917s0007 I 0.662
O49746_ARATH Arabidopsis thaliana O49746_ARATH I 0.662
Carubv10027655m.g Capsella rubella Carubv10027655m.g I 0.662
Eucgr.B03941 Eucalyptus grandis Eucgr.B03941 I 0.662
ATMYB68 Arabidopsis lyrata fgenesh2_kg.8__2632__AT5G65790.1 I 0.662