PGSC0003DMG400021654 (Solanum tuberosum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 PGSC0003DMG400021654 T277655_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AtMYB17
M07099_2.00
Arabidopsis thaliana
YYYACCWACCWHHHH

DDDDWGGTWGGTRRR
Dap-seq
OMalley et al.(2016)
MYB17_colamp_a
0.802 0.871
MYB92
M07123_2.00
Arabidopsis thaliana
NHHACCTAMY

RKTAGGTDDN
Dap-seq
OMalley et al.(2016)
MYB92_100ng20cy_b
0.728 0.753
MYB92
M07124_2.00
Arabidopsis thaliana
NNNNWNNYYYACCWAMYHH

DDRKTWGGTRRRNNWNNNN
Dap-seq
OMalley et al.(2016)
MYB92_colamp_a
0.728 0.753
MYB106
M11040_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AT3G01140_01
0.721 0.763
AtMYB93
M07020_2.00
Arabidopsis thaliana
HDNYYYAMCWAMYHHHHHHHH

DDDDDDDDRKTWGKTRRRNHD
Dap-seq
OMalley et al.(2016)
MYB93_col_a
0.715 0.742
AtMYB93
M07021_2.00
Arabidopsis thaliana
NNHNBYYYAMCWAMY

RKTWGKTRRRVNDNN
Dap-seq
OMalley et al.(2016)
MYB93_colamp_a
0.715 0.742
MYB107
M07061_2.00
Arabidopsis thaliana
NDDWDBBYYACCWAMYHH

DDRKTWGGTRRVVHWHHN
Dap-seq
OMalley et al.(2016)
MYB107_col_a
0.687 0.710
MYB107
M07062_2.00
Arabidopsis thaliana
WNBYYYACCWAMYH

DRKTWGGTRRRVNW
Dap-seq
OMalley et al.(2016)
MYB107_colamp_a
0.687 0.710
MYB55
M00876_2.00
Arabidopsis thaliana
ACCWAMCD

HGKTWGGT
PBM
Franco-Zorrilla et al.(2014)
MYB55
0.673 0.720
MYB55
M07102_2.00
Arabidopsis thaliana
HNNNHBYAMCWAMCD

HGKTWGKTRVDNNND
Dap-seq
OMalley et al.(2016)
MYB55_colamp_a
0.673 0.720
MYB55
M07103_2.00
Arabidopsis thaliana
NYNYAMCHACCRHH

DDYGGTDGKTRNRN
Dap-seq
OMalley et al.(2016)
MYB55_col
0.673 0.720
MYB61
M07002_2.00
Arabidopsis thaliana
HNYAMCHACCDNHNH

DNDNHGGTDGKTRND
Dap-seq
OMalley et al.(2016)
MYB61_col_a
0.673 0.710
MYB61
M07003_2.00
Arabidopsis thaliana
NHNYACCWAMCDH

DHGKTWGGTRNDN
Dap-seq
OMalley et al.(2016)
MYB61_colamp_a
0.673 0.710
ATY53
M07078_2.00
Arabidopsis thaliana
YBYACCWAMCDHHNNNNNNNN

NNNNNNNNDDHGKTWGGTRVR
Dap-seq
OMalley et al.(2016)
MYB67_col_a
0.664 0.656
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400055763 Myb 14 61
PGSC0003DMT400055763 Myb 67 112

Links

Other Myb/SANT family TFs
Other Solanum tuberosum TFs

686 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AMTR_s00021p00221770 Amborella trichopoda AMTR_s00021p00221770 N 0.000
Aquca_100_00036 Aquilegia coerulea Aquca_100_00036 N 0.000
ARF1 Arabidopsis lyrata fgenesh2_kg.2__468__AT1G59750.1 N 0.000
ARF1 Arabidopsis thaliana AT1G59750 N 0.000
Bostr.10040s0256 Boechera stricta Bostr.10040s0256 N 0.000
BRADI4G17410 Brachypodium distachyon BRADI4G17410 I 0.000
Bo1g090350 Brassica oleracea Bo1g090350 N 0.000
Bo4g083590 Brassica oleracea Bo4g083590 N 0.000
Bra035427 Brassica rapa Bra035427 N 0.000
Cagra.0996s0001 Capsella grandiflora Cagra.0996s0001 N 0.000
Cagra.1226s0063 Capsella grandiflora Cagra.1226s0063 N 0.000
Carubv10006513m.g Capsella rubella Carubv10006513m.g N 0.000
Carubv10022415m.g Capsella rubella Carubv10022415m.g N 0.000
Cla015243 Citrullus lanatus Cla015243 N 0.000
Cla001927 Citrullus lanatus Cla001927 N 0.000
Ciclev10000491m.g Citrus clementina Ciclev10000491m.g N 0.000
Cucsa.183410 Cucumis sativus Cucsa.183410 N 0.000
Eucgr.G00076 Eucalyptus grandis Eucgr.G00076 I 0.000
Thhalv10023326m.g Eutrema salsugineum Thhalv10023326m.g N 0.000
GLYMA07G40270 Glycine max GLYMA07G40270 N 0.000
GLYMA12G28550 Glycine max GLYMA12G28550 N 0.000
Gorai.011G091100 Gossypium raimondii Gorai.011G091100 N 0.000
MLOC_64596 Hordeum vulgare MLOC_64596 I 0.000
MLOC_18401 Hordeum vulgare MLOC_18401 N 0.000
Lus10024455.g Linum usitatissimum Lus10024455.g N 0.000
Lus10007440.g Linum usitatissimum Lus10007440.g N 0.000
cassava11455.m1 Manihot esculenta cassava11455.m1 N 0.000
cassava11453.m1 Manihot esculenta cassava11453.m1 N 0.000
cassava11454.m1 Manihot esculenta cassava11454.m1 N 0.000
cassava7098.valid.m1 Manihot esculenta cassava7098.valid.m1 N 0.000
cassava7099.valid.m1 Manihot esculenta cassava7099.valid.m1 N 0.000
cassava11456.m1 Manihot esculenta cassava11456.m1 N 0.000
mgf006427m Mimulus guttatus mgf006427m N 0.000
GSMUA_Achr2G19760_001 Musa acuminata GSMUA_Achr2G19760_001 N 0.000
GSMUA_Achr6G16450_001 Musa acuminata GSMUA_Achr6G16450_001 N 0.000
OBART02G20600 Oryza barthii OBART02G20600 N 0.000
OBART12G11990 Oryza barthii OBART12G11990 N 0.000
OB01G51580 Oryza brachyantha OB01G51580 N 0.000
ORGLA02G0176700 Oryza glaberrima ORGLA02G0176700 N 0.000
ORGLA12G0109100 Oryza glaberrima ORGLA12G0109100 N 0.000
OGLUM02G20880 Oryza glumaepatula OGLUM02G20880 N 0.000
OGLUM12G13560 Oryza glumaepatula OGLUM12G13560 N 0.000
BGIOSGA008429 Oryza indica BGIOSGA008429 N 0.000
BGIOSGA036199 Oryza indica BGIOSGA036199 N 0.000
OLONG_012362 Oryza longistaminata OLONG_012362 N 0.000
OLONG_019549 Oryza longistaminata OLONG_019549 N 0.000
OMERI02G20310 Oryza meridionalis OMERI02G20310 N 0.000
OMERI12G08550 Oryza meridionalis OMERI12G08550 N 0.000
ONIVA12G12070 Oryza nivara ONIVA12G12070 N 0.000
ONIVA02G22590 Oryza nivara ONIVA02G22590 N 0.000
OPUNC12G10620 Oryza punctata OPUNC12G10620 N 0.000
OPUNC02G18520 Oryza punctata OPUNC02G18520 N 0.000
ORUFI02G21640 Oryza rufipogon ORUFI02G21640 N 0.000
ORUFI12G13110 Oryza rufipogon ORUFI12G13110 N 0.000
ARF7 Oryza sativa OS02G0557200 N 0.000
ARF24 Oryza sativa OS12G0479400 N 0.000
POPTR_0003s00890 Populus trichocarpa POPTR_0003s00890 N 0.000
Pm003827 Prunus mume Pm003827 N 0.000
PRUPE_ppa002394mg Prunus persica PRUPE_ppa002394mg N 0.000
29742.m001397 Ricinus communis 29742.m001397 N 0.000
SapurV1A.0422s0040 Salix purpurea SapurV1A.0422s0040 I 0.000
SapurV1A.0225s0120 Salix purpurea SapurV1A.0225s0120 N 0.000
Si025988m.g Setaria italica Si025988m.g N 0.000
Solyc01g103050.2 Solanum lycopersicum Solyc01g103050.2 N 0.000
PGSC0003DMG400020711 Solanum tuberosum PGSC0003DMG400020711 I 0.000
Sb05g019540 Sorghum bicolor Sb05g019540 N 0.000
Sb04g022830 Sorghum bicolor Sb04g022830 N 0.000
TCM_027113 Theobroma cacao TCM_027113 I 0.000
Traes_2DL_A86E54838 Triticum aestivum Traes_2DL_A86E54838 N 0.000
Traes_2AL_89543BA1A Triticum aestivum Traes_2AL_89543BA1A N 0.000
TRIUR3_33501 Triticum urartu TRIUR3_33501 N 0.000
VIT_18s0089g00910 Vitis vinifera VIT_18s0089g00910 N 0.000