CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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PGSC0003DMG400025612
(
Solanum tuberosum
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00249 (Myb_DNA-binding)
IPR014778
PGSC0003DMG400025612
T277677_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
MYB124
M01267_2.00
Arabidopsis thaliana
NNVCGCKCBN
NVGMGCGBNN
PBM
Lambert et al.(2019)
pTH11556
0.787
0.879
MYB88
M07042_2.00
Arabidopsis thaliana
NNNHNACGCKCCDHH
DDHGGMGCGTNDNNN
Dap-seq
OMalley et al.(2016)
MYB88_col_a
0.750
0.835
MYB88
M07043_2.00
Arabidopsis thaliana
NNNACGCTCCHNN
NNDGGAGCGTNNN
Dap-seq
OMalley et al.(2016)
MYB88_colamp_a
0.750
0.835
MYB88
M11038_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MYB88_01
0.750
0.835
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
PGSC0003DMT400065796
Myb
31
76
VSWSQEEDDILREQIRIHGTDNWTIIASKFKDKTTRQCRRRWFTYL
PGSC0003DMT400065796
Myb
82
126
KGGWSPEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFTTL
PGSC0003DMT400065797
Myb
31
76
VSWSQEEDDILREQIRIHGTDNWTIIASKFKDKTTRQCRRRWFTYL
PGSC0003DMT400065797
Myb
82
126
KGGWSPEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFTTL
Links
Other
Myb/SANT
family TFs
Other
Solanum tuberosum
TFs
77 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Solyc05g007160.2
Solanum lycopersicum
Solyc05g007160.2
I
0.909
Eucgr.B03417
Eucalyptus grandis
Eucgr.B03417
I
0.859
orange1.1g044977m.g
Citrus sinensis
orange1.1g044977m.g
I
0.856
Ciclev10031405m.g
Citrus clementina
Ciclev10031405m.g
I
0.856
Ca_18779
Cicer arietinum
Ca_18779
I
0.856
MTR_5g038910
Medicago truncatula
MTR_5g038910
I
0.856
PK05123.1
Cannabis sativa
PK05123.1
I
0.847
Cucsa.285270
Cucumis sativus
Cucsa.285270
I
0.844
Cla010333
Citrullus lanatus
Cla010333
I
0.844
MDP0000210970
Malus domestica
MDP0000210970
I
0.842
Pm006532
Prunus mume
Pm006532
I
0.834
PRUPE_ppa017536mg
Prunus persica
PRUPE_ppa017536mg
I
0.834
evm.TU.supercontig_183.27
Carica papaya
evm.TU.supercontig_183.27
I
0.834
Solyc04g005710.1
Solanum lycopersicum
Solyc04g005710.1
I
0.831
29736.m002013
Ricinus communis
29736.m002013
I
0.829
POPTR_0010s10310
Populus trichocarpa
POPTR_0010s10310
I
0.826
MDP0000165523
Malus domestica
MDP0000165523
I
0.826
SapurV1A.0062s0030
Salix purpurea
SapurV1A.0062s0030
I
0.826
GLYMA02G02310
Glycine max
GLYMA02G02310
I
0.826
cassava35260.valid.m1
Manihot esculenta
cassava35260.valid.m1
I
0.826
Gorai.005G139500
Gossypium raimondii
Gorai.005G139500
I
0.826
cassava39089.m1
Manihot esculenta
cassava39089.m1
I
0.826
Lus10012847.g
Linum usitatissimum
Lus10012847.g
I
0.819
Lus10030494.g
Linum usitatissimum
Lus10030494.g
I
0.819
Eucgr.G02522
Eucalyptus grandis
Eucgr.G02522
I
0.818
SapurV1A.0200s0020
Salix purpurea
SapurV1A.0200s0020
I
0.817
GLYMA01G05190
Glycine max
GLYMA01G05190
I
0.817
POPTR_0008s14790
Populus trichocarpa
POPTR_0008s14790
I
0.817
GLYMA08G40950
Glycine max
GLYMA08G40950
I
0.809
GLYMA18G16040
Glycine max
GLYMA18G16040
I
0.809
MTR_8g468380
Medicago truncatula
MTR_8g468380
I
0.807
Carubv10011707m.g
Capsella rubella
Carubv10011707m.g
I
0.802
Bostr.13671s0016
Boechera stricta
Bostr.13671s0016
I
0.802
Cagra.3501s0066
Capsella grandiflora
Cagra.3501s0066
I
0.802
mgf009409m
Mimulus guttatus
mgf009409m
I
0.802
PGSC0003DMG400026758
Solanum tuberosum
PGSC0003DMG400026758
I
0.798
PGSC0003DMG400002828
Solanum tuberosum
PGSC0003DMG400002828
I
0.798
TCM_011776
Theobroma cacao
TCM_011776
I
0.796
Aquca_002_00543
Aquilegia coerulea
Aquca_002_00543
I
0.793
VIT_01s0026g01910
Vitis vinifera
VIT_01s0026g01910
I
0.793
Gorai.013G083300
Gossypium raimondii
Gorai.013G083300
I
0.792
MYB124
Arabidopsis thaliana
AT1G14350
D
0.787
Thhalv10007659m.g
Eutrema salsugineum
Thhalv10007659m.g
I
0.770
Bra019658
Brassica rapa
Bra019658
I
0.770
Thhalv10004109m.g
Eutrema salsugineum
Thhalv10004109m.g
I
0.767
Bo2g136560
Brassica oleracea
Bo2g136560
I
0.767
Bo7g080730
Brassica oleracea
Bo7g080730
I
0.766
Bra024804
Brassica rapa
Bra024804
I
0.766
FLP
Arabidopsis lyrata
fgenesh2_kg.1__1561__AT1G14350.1
I
0.762
Bo5g019500
Brassica oleracea
Bo5g019500
I
0.761
MYB88
Arabidopsis thaliana
AT2G02820
D
0.750
Bostr.0556s0099
Boechera stricta
Bostr.0556s0099
I
0.750
MYB88
Arabidopsis lyrata
fgenesh2_kg.5__181__AT2G02820.2
I
0.750
AMTR_s00010p00252990
Amborella trichopoda
AMTR_s00010p00252990
I
0.735
Cagra.0534s0022
Capsella grandiflora
Cagra.0534s0022
I
0.729
Carubv10017119m.g
Capsella rubella
Carubv10017119m.g
I
0.729
GSMUA_Achr10G18880_001
Musa acuminata
GSMUA_Achr10G18880_001
I
0.724
Traes_2BS_F1B450FA4
Triticum aestivum
Traes_2BS_F1B450FA4
I
0.711
Si029124m.g
Setaria italica
Si029124m.g
I
0.709
Pavir.Bb03405
Panicum virgatum
Pavir.Bb03405
I
0.709
OGLUM07G22980
Oryza glumaepatula
OGLUM07G22980
I
0.701
OBART07G22930
Oryza barthii
OBART07G22930
I
0.701
BGIOSGA026188
Oryza indica
BGIOSGA026188
I
0.701
GRMZM2G064630
Zea mays
GRMZM2G064630
I
0.701
ORUFI07G24080
Oryza rufipogon
ORUFI07G24080
I
0.701
ORGLA07G0179200
Oryza glaberrima
ORGLA07G0179200
I
0.701
OS07G0627300
Oryza sativa
OS07G0627300
I
0.701
Sb02g040050
Sorghum bicolor
Sb02g040050
I
0.701
OB07G28520
Oryza brachyantha
OB07G28520
I
0.697
Traes_2DS_9430AAD52
Triticum aestivum
Traes_2DS_9430AAD52
I
0.695
PDK_20s1473891g001
Phoenix dactylifera
PDK_20s1473891g001
I
0.695
Traes_2AS_1161E1D2E
Triticum aestivum
Traes_2AS_1161E1D2E
I
0.695
OPUNC07G21540
Oryza punctata
OPUNC07G21540
I
0.692
Pavir.J36475
Panicum virgatum
Pavir.J36475
I
0.684
mgf021059m
Mimulus guttatus
mgf021059m
N
0.672
TRIUR3_24509
Triticum urartu
TRIUR3_24509
N
0.663