PGSC0003DMG400027126 (Solanum tuberosum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 PGSC0003DMG400027126 T277689_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT3G11280
M01075_2.00 		Arabidopsis thaliana
NNTTATCNNN
NNNGATAANN		 PBM
Sullivan et al.(2014)
pTH7245 		0.743 0.798
AT5G56840
M07144_2.00 		Arabidopsis thaliana
WWYMTTATCCAWWWN
NWWWTGGATAAKRWW		 Dap-seq
OMalley et al.(2016)
AT5G56840_col_a 		0.703 0.824
AT3G11280
M07074_2.00 		Arabidopsis thaliana
DWDWDGATAAKRWW
WWYMTTATCHWHWH		 Dap-seq
OMalley et al.(2016)
At3g11280_col_a 		0.743 0.798
AT5G56840
M07145_2.00 		Arabidopsis thaliana
HHHWWYHTTATCCWHW
WDWGGATAADRWWDDD		 Dap-seq
OMalley et al.(2016)
AT5G56840_colamp_a 		0.703 0.824
AT3G11280
M07075_2.00 		Arabidopsis thaliana
NNWNNDGATAAGRWHDNN
NNHDWYCTTATCHNNWNN		 Dap-seq
OMalley et al.(2016)
At3g11280_colamp_a 		0.743 0.798
PK23829.1
M02355_2.00 		Cannabis sativa
VTTATCCD
HGGATAAB		 PBM
Weirauch et al.(2014)
pTH9592 		0.691 0.824
AT3G16350
M01078_2.00 		Arabidopsis thaliana
NYTATCYDNN
NNHRGATARN		 PBM
Sullivan et al.(2014)
pTH7149 		0.682 0.794
fgenesh1_pg.scaffold_70000111
M02342_2.00 		Physcomitrella patens
NNHNATCBN
NVGATNDNN		 PBM
Weirauch et al.(2014)
pTH8492 		0.680 0.794
PK17526.1
M02353_2.00 		Cannabis sativa
NNTTATCCAN
NTGGATAANN		 PBM
Weirauch et al.(2014)
pTH9588 		0.680 0.794
AT1G19000
M02287_2.00 		Arabidopsis thaliana
NYTATCYDNN
NNHRGATARN		 PBM
Weirauch et al.(2014)
pTH7120 		0.678 0.794
AT1G19000
M07012_2.00 		Arabidopsis thaliana
HDYHTTATCCAHWW
WWDTGGATAADRHD		 Dap-seq
OMalley et al.(2016)
At1g19000_col_a 		0.678 0.794
AT1G19000
M07013_2.00 		Arabidopsis thaliana
WDYNTTATCCAHWW
WWDTGGATAANRHW		 Dap-seq
OMalley et al.(2016)
At1g19000_colamp_a 		0.678 0.794
PK00738.1
M02346_2.00 		Cannabis sativa
NYWATCYDNN
NNHRGATWRN		 PBM
Weirauch et al.(2014)
pTH9487 		0.672 0.765
PK29550.1
M02358_2.00 		Cannabis sativa
NNHDATCYNN
NNRGATHDNN		 PBM
Weirauch et al.(2014)
pTH9595 		0.672 0.765
KUA1
M02312_2.00 		Arabidopsis thaliana
NNTTATCCDN
NHGGATAANN		 PBM
Weirauch et al.(2014)
pTH7647 		0.670 0.765
KUA1
M07136_2.00 		Arabidopsis thaliana
WWHHTTATCCAHWW
WWDTGGATAADDWW		 Dap-seq
OMalley et al.(2016)
At5g47390_colamp_a 		0.670 0.765
KUA1
M07137_2.00 		Arabidopsis thaliana
HHWDYHTTATCCAHW
WDTGGATAADRHWDD		 Dap-seq
OMalley et al.(2016)
At5g47390_col_b 		0.670 0.765
0600010132
M02360_2.00 		Ostreococcus tauri
NNVTTATCCDNNN
NNNHGGATAABNN		 PBM
Weirauch et al.(2014)
pTH9441 		0.662 0.765
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400069753 Myb 121 168
PGSC0003DMT400069754 Myb 1 35

Links

Other Myb/SANT family TFs
Other Solanum tuberosum TFs

Invalid Input OrderBy

467 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action