CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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PGSC0003DMG401023433
(
Solanum tuberosum
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00249 (Myb_DNA-binding)
IPR014778
PGSC0003DMG401023433
T277766_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PK06182.1
M02349_2.00
Cannabis sativa
WTACCTACCN
NGGTAGGTAW
PBM
Weirauch et al.(2014)
pTH9581
0.701
0.774
MYB111
M00882_2.00
Arabidopsis thaliana
NNNAMCDAMY
RKTHGKTNNN
PBM
Franco-Zorrilla et al.(2014)
MYB111
0.663
0.774
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
PGSC0003DMT400060236
Myb
14
61
KGKWTDEEDELLVKYIQVNGEGSWRSLPKNAGLSRCGKSCRLRWTNYL
PGSC0003DMT400060236
Myb
67
112
RGKFTAEEDEIIVKLHSTLGNRWSSIAQLLSGRTDNDIKNYWNSNL
Links
Other
Myb/SANT
family TFs
Other
Solanum tuberosum
TFs
75 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Gorai.008G141000
Gossypium raimondii
Gorai.008G141000
I
0.740
GSMUA_Achr5G21250_001
Musa acuminata
GSMUA_Achr5G21250_001
I
0.710
GRMZM2G057027
Zea mays
GRMZM2G057027
I
0.706
GRMZM2G084799
Zea mays
GRMZM2G084799
I
0.706
Cla009418
Citrullus lanatus
Cla009418
I
0.705
GSMUA_AchrUn_randomG12700_001
Musa acuminata
GSMUA_AchrUn_randomG12700_001
I
0.704
TCM_004777
Theobroma cacao
TCM_004777
I
0.703
Solyc01g079620.2
Solanum lycopersicum
Solyc01g079620.2
I
0.701
Gorai.001G143200
Gossypium raimondii
Gorai.001G143200
I
0.701
PK06182.1
Cannabis sativa
PK06182.1
D
0.701
PGSC0003DMG400009033
Solanum tuberosum
PGSC0003DMG400009033
I
0.701
SapurV1A.0180s0510
Salix purpurea
SapurV1A.0180s0510
I
0.700
POPTR_0014s11780
Populus trichocarpa
POPTR_0014s11780
I
0.697
OPUNC03G13890
Oryza punctata
OPUNC03G13890
I
0.690
Thhalv10001498m.g
Eutrema salsugineum
Thhalv10001498m.g
I
0.689
Si002107m.g
Setaria italica
Si002107m.g
I
0.686
Sb03g012550
Sorghum bicolor
Sb03g012550
I
0.686
POPTR_0002s19920
Populus trichocarpa
POPTR_0002s19920
I
0.683
VIT_07s0005g01210
Vitis vinifera
VIT_07s0005g01210
I
0.683
Ciclev10020307m.g
Citrus clementina
Ciclev10020307m.g
I
0.683
orange1.1g014829m.g
Citrus sinensis
orange1.1g014829m.g
I
0.683
Sb01g037670
Sorghum bicolor
Sb01g037670
I
0.682
Thhalv10006080m.g
Eutrema salsugineum
Thhalv10006080m.g
I
0.680
cassava24756.valid.m1
Manihot esculenta
cassava24756.valid.m1
I
0.680
Lus10001458.g
Linum usitatissimum
Lus10001458.g
I
0.680
MYB111
Arabidopsis lyrata
scaffold_801313.1
I
0.680
PRUPE_ppa004560mg
Prunus persica
PRUPE_ppa004560mg
I
0.679
Solyc06g009710.2
Solanum lycopersicum
Solyc06g009710.2
I
0.679
GRMZM2G051528
Zea mays
GRMZM2G051528
I
0.678
GRMZM2G051256
Zea mays
GRMZM2G051256
I
0.677
evm.TU.supercontig_18.11
Carica papaya
evm.TU.supercontig_18.11
I
0.677
GSMUA_Achr8G10470_001
Musa acuminata
GSMUA_Achr8G10470_001
I
0.677
orange1.1g041081m.g
Citrus sinensis
orange1.1g041081m.g
I
0.676
Ciclev10005376m.g
Citrus clementina
Ciclev10005376m.g
I
0.676
PDK_20s1388491g004
Phoenix dactylifera
PDK_20s1388491g004
I
0.675
GLYMA17G03480
Glycine max
GLYMA17G03480
I
0.674
Solyc12g049350.1
Solanum lycopersicum
Solyc12g049350.1
I
0.674
MTR_4g121460
Medicago truncatula
MTR_4g121460
I
0.674
PGSC0003DMG400004371
Solanum tuberosum
PGSC0003DMG400004371
I
0.674
Pm008294
Prunus mume
Pm008294
I
0.672
MDP0000119725
Malus domestica
MDP0000119725
I
0.671
MDP0000607330
Malus domestica
MDP0000607330
I
0.671
Thhalv10004518m.g
Eutrema salsugineum
Thhalv10004518m.g
I
0.671
Cagra.13170s0007
Capsella grandiflora
Cagra.13170s0007
I
0.671
SapurV1A.0158s0390
Salix purpurea
SapurV1A.0158s0390
I
0.671
ATMYB11
Arabidopsis lyrata
fgenesh1_pg.C_scaffold_5002710
I
0.671
Carubv10019345m.g
Capsella rubella
Carubv10019345m.g
I
0.671
PGSC0003DMG400007304
Solanum tuberosum
PGSC0003DMG400007304
I
0.670
GLYMA09G04370
Glycine max
GLYMA09G04370
I
0.667
GLYMA02G01740
Glycine max
GLYMA02G01740
I
0.667
GLYMA07G37142
Glycine max
GLYMA07G37142
I
0.667
GLYMA15G15400
Glycine max
GLYMA15G15400
I
0.667
BRADI2G11676
Brachypodium distachyon
BRADI2G11676
I
0.666
BGIOSGA010900
Oryza indica
BGIOSGA010900
I
0.666
Pavir.Ib01420
Panicum virgatum
Pavir.Ib01420
I
0.666
Cucsa.069500
Cucumis sativus
Cucsa.069500
I
0.666
LPERR06G00600
Leersia perrieri
LPERR06G00600
I
0.666
OBART03G14380
Oryza barthii
OBART03G14380
I
0.666
OMERI03G13130
Oryza meridionalis
OMERI03G13130
I
0.666
ORUFI03G15030
Oryza rufipogon
ORUFI03G15030
I
0.666
Si039538m.g
Setaria italica
Si039538m.g
I
0.666
LPERR03G12690
Leersia perrieri
LPERR03G12690
I
0.666
ONIVA03G15280
Oryza nivara
ONIVA03G15280
I
0.666
Bostr.13158s0261
Boechera stricta
Bostr.13158s0261
I
0.666
MYB12
Arabidopsis lyrata
fgenesh2_kg.4__2983__AT2G47460.1
I
0.665
Bra000453
Brassica rapa
Bra000453
I
0.665
Bostr.15774s0064
Boechera stricta
Bostr.15774s0064
I
0.665
MTR_2g034790
Medicago truncatula
MTR_2g034790
I
0.665
MYB12
Arabidopsis thaliana
AT2G47460
I
0.665
Bostr.25993s0011
Boechera stricta
Bostr.25993s0011
I
0.665
TCM_021317
Theobroma cacao
TCM_021317
I
0.664
MYB111
Arabidopsis thaliana
AT5G49330
D
0.663
gene02324-v1.0-hybrid
Fragaria vesca
gene02324-v1.0-hybrid
I
0.662
TRIUR3_05136
Triticum urartu
TRIUR3_05136
I
0.662
PRUPE_ppa007594mg
Prunus persica
PRUPE_ppa007594mg
I
0.661