PGSC0003DMG401025742 (Solanum tuberosum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 PGSC0003DMG401025742 T277768_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
TRB1
M01070_2.00
Arabidopsis thaliana
WRMCCTAR

YTAGGKYW
PBM
Sullivan et al.(2014)
pTH7117
0.845 0.870
TRB2
M02314_2.00
Arabidopsis thaliana
WRMCCTAR

YTAGGKYW
PBM
Weirauch et al.(2014)
pTH7094
0.795 0.870
TRB2
M01083_2.00
Arabidopsis thaliana
HRMCCTAR

YTAGGKYD
PBM
Sullivan et al.(2014)
pTH7260
0.795 0.870
TRB2
M07157_2.00
Arabidopsis thaliana
HHHHHNWWRCCCTAAWHHN

NDDWTTAGGGYWWNDDDDD
Dap-seq
OMalley et al.(2016)
TBP3_col_a
0.795 0.870
TRB2
M07158_2.00
Arabidopsis thaliana
HVDHHHNWARCCCTAAHYH

DRDTTAGGGYTWNDDDHBD
Dap-seq
OMalley et al.(2016)
TBP3_colamp_a
0.795 0.870
OS01G0708000
M02326_2.00
Oryza sativa
WRMCCTAVNN

NNBTAGGKYW
PBM
Weirauch et al.(2014)
pTH8716
0.772 0.804
PK06103.1
M02348_2.00
Cannabis sativa
TGCCCTAG

CTAGGGCA
PBM
Weirauch et al.(2014)
pTH9649
0.739 0.848
AT1G72740
M07033_2.00
Arabidopsis thaliana
HMNAAACCCTAAWYY

RRWTTAGGGTTTNKD
Dap-seq
OMalley et al.(2016)
AT1G72740_col_a
0.728 0.739
AT1G72740
M07034_2.00
Arabidopsis thaliana
HNWAACCCTAAHYHNNNHNNN

NNNDNNNDRDTTAGGGTTWND
Dap-seq
OMalley et al.(2016)
AT1G72740_colamp_a
0.728 0.739
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400066134 Myb 5 56

Links

Other Myb/SANT family TFs
Other Solanum tuberosum TFs

Invalid Input OrderBy

245 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action