POPTR_0001s02910 (Populus trichocarpa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 POPTR_0001s02910 T278174_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
APRR2
M02300_2.00
Arabidopsis thaliana
NNRNWATCNN

NNGATWNYNN
PBM
Weirauch et al.(2014)
pTH7102
0.748 0.870
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0001s02910.1 Myb 297 346
POPTR_0001s02910.2 Myb 242 292
POPTR_0001s02910.3 Myb 314 364
POPTR_0001s02910.4 Myb 242 292
POPTR_0001s02910.5 Myb 314 364
POPTR_0001s02910.6 Myb 314 364
POPTR_0001s02910.7 Myb 314 364

Links

Other Myb/SANT family TFs
Other Populus trichocarpa TFs

72 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
30054.m000786 Ricinus communis 30054.m000786 I 0.806
AMTR_s00149p00035260 Amborella trichopoda AMTR_s00149p00035260 I 0.693
APRR2 Arabidopsis lyrata fgenesh2_kg.7__2503__AT4G18020.2 I 0.794
APRR2 Arabidopsis thaliana AT4G18020 D 0.794
APRR2 Vitis vinifera VIT_02s0012g00570 I 0.813
Aquca_044_00072 Aquilegia coerulea Aquca_044_00072 I 0.756
Bo1g019180 Brassica oleracea Bo1g019180 I 0.772
Bo7g067200 Brassica oleracea Bo7g067200 I 0.682
Bo7g105690 Brassica oleracea Bo7g105690 I 0.772
Bostr.30275s0270 Boechera stricta Bostr.30275s0270 I 0.772
Bostr.3148s0040 Boechera stricta Bostr.3148s0040 I 0.684
Bra012623 Brassica rapa Bra012623 I 0.772
Bra013277 Brassica rapa Bra013277 I 0.772
Bra013278 Brassica rapa Bra013278 I 0.772
Bra013279 Brassica rapa Bra013279 I 0.772
Bra033726 Brassica rapa Bra033726 I 0.682
Cagra.0381s0008 Capsella grandiflora Cagra.0381s0008 I 0.684
Cagra.1595s0002 Capsella grandiflora Cagra.1595s0002 I 0.705
Carubv10004540m.g Capsella rubella Carubv10004540m.g I 0.705
Carubv10026528m.g Capsella rubella Carubv10026528m.g I 0.684
cassava2466.valid.m1 Manihot esculenta cassava2466.valid.m1 I 0.797
cassava42047.valid.m1 Manihot esculenta cassava42047.valid.m1 I 0.734
cassava42048.valid.m1 Manihot esculenta cassava42048.valid.m1 I 0.734
Ca_02285 Cicer arietinum Ca_02285 I 0.724
Ca_12825 Cicer arietinum Ca_12825 I 0.716
chr2.CM0021.770.nc Lotus japonicus chr2.CM0021.770.nc I 0.724
chr4.CM0831.100.nd Lotus japonicus chr4.CM0831.100.nd I 0.716
Ciclev10031120m.g Citrus clementina Ciclev10031120m.g I 0.813
Cla008926 Citrullus lanatus Cla008926 I 0.816
Cla016403 Citrullus lanatus Cla016403 I 0.668
Cucsa.313480 Cucumis sativus Cucsa.313480 I 0.672
Cucsa.321580 Cucumis sativus Cucsa.321580 I 0.816
Eucgr.E00308 Eucalyptus grandis Eucgr.E00308 I 0.805
Eucgr.K01056 Eucalyptus grandis Eucgr.K01056 I 0.662
evm.TU.supercontig_6.428 Carica papaya evm.TU.supercontig_6.428 I 0.873
fgenesh2_kg.8__391__AT5G44190.1 Arabidopsis lyrata fgenesh2_kg.8__391__AT5G44190.1 I 0.684
gene10484-v1.0-hybrid Fragaria vesca gene10484-v1.0-hybrid I 0.813
GLK2 Arabidopsis thaliana AT5G44190 I 0.684
GLYMA01G40900 Glycine max GLYMA01G40900 I 0.724
GLYMA05G06070 Glycine max GLYMA05G06070 I 0.675
GLYMA11G04441 Glycine max GLYMA11G04441 I 0.724
GLYMA17G16360 Glycine max GLYMA17G16360 I 0.712
Gorai.003G180100 Gossypium raimondii Gorai.003G180100 I 0.684
Gorai.004G188300 Gossypium raimondii Gorai.004G188300 I 0.689
Gorai.008G228800 Gossypium raimondii Gorai.008G228800 I 0.724
GSMUA_Achr11G17740_001 Musa acuminata GSMUA_Achr11G17740_001 I 0.678
Lus10003013.g Linum usitatissimum Lus10003013.g I 0.789
Lus10011044.g Linum usitatissimum Lus10011044.g I 0.797
Lus10030938.g Linum usitatissimum Lus10030938.g I 0.674
Lus10040109.g Linum usitatissimum Lus10040109.g I 0.776
MDP0000237396 Malus domestica MDP0000237396 I 0.799
MDP0000248863 Malus domestica MDP0000248863 I 0.749
MTR_4g098870 Medicago truncatula MTR_4g098870 I 0.708
MTR_5g014040 Medicago truncatula MTR_5g014040 I 0.689
orange1.1g008254m.g Citrus sinensis orange1.1g008254m.g I 0.813
PDK_20s1585631g001 Phoenix dactylifera PDK_20s1585631g001 I 0.782
PGSC0003DMG400021857 Solanum tuberosum PGSC0003DMG400021857 I 0.714
PGSC0003DMG400024217 Solanum tuberosum PGSC0003DMG400024217 I 0.716
PGSC0003DMG400026587 Solanum tuberosum PGSC0003DMG400026587 I 0.756
PK19826.1 Cannabis sativa PK19826.1 I 0.813
Pm014733 Prunus mume Pm014733 I 0.813
POPTR_0003s08600 Populus trichocarpa POPTR_0003s08600 I 0.819
PRUPE_ppa004161mg Prunus persica PRUPE_ppa004161mg I 0.813
SapurV1A.0132s0010 Salix purpurea SapurV1A.0132s0010 I 0.873
SapurV1A.1296s0050 Salix purpurea SapurV1A.1296s0050 I 0.862
SELMODRAFT_428906 Selaginella moellendorffii SELMODRAFT_428906 I 0.742
Solyc06g061030.2 Solanum lycopersicum Solyc06g061030.2 I 0.756
Solyc08g077230.2 Solanum lycopersicum Solyc08g077230.2 I 0.716
TCM_015780 Theobroma cacao TCM_015780 I 0.764
Thhalv10003223m.g Eutrema salsugineum Thhalv10003223m.g I 0.684
Thhalv10024919m.g Eutrema salsugineum Thhalv10024919m.g I 0.772