POPTR_0001s13060 (Populus trichocarpa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 POPTR_0001s13060 T278184_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ASR3
M07053_2.00
Arabidopsis thaliana
DNNNNHHWNDRCCCTWAW

WTWAGGGYHNWDDNNNNH
Dap-seq
OMalley et al.(2016)
AT2G33550_col_a
0.909 1.000
ASR3
M07054_2.00
Arabidopsis thaliana
NHWDDTRCCCTWMW

WKWAGGGYAHHWDN
Dap-seq
OMalley et al.(2016)
AT2G33550_colamp_a
0.909 1.000
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0001s13060.1 Myb 42 109

Links

Other Myb/SANT family TFs
Other Populus trichocarpa TFs

38 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
mgf009760m Mimulus guttatus mgf009760m I 0.909
cassava12909.valid.m1 Manihot esculenta cassava12909.valid.m1 I 0.909
30128.m008552 Ricinus communis 30128.m008552 I 0.909
Ciclev10005329m.g Citrus clementina Ciclev10005329m.g I 0.909
evm.TU.supercontig_2461.1 Carica papaya evm.TU.supercontig_2461.1 I 0.909
SapurV1A.2674s0010 Salix purpurea SapurV1A.2674s0010 I 0.909
orange1.1g019057m.g Citrus sinensis orange1.1g019057m.g I 0.909
Gorai.002G021600 Gossypium raimondii Gorai.002G021600 I 0.909
Solyc04g045430.2 Solanum lycopersicum Solyc04g045430.2 I 0.909
cassava13649.valid.m1 Manihot esculenta cassava13649.valid.m1 I 0.909
ASR3 Arabidopsis thaliana AT2G33550 D 0.909
POPTR_0003s16150 Populus trichocarpa POPTR_0003s16150 I 0.901
SapurV1A.0499s0110 Salix purpurea SapurV1A.0499s0110 I 0.901
Aquca_043_00021 Aquilegia coerulea Aquca_043_00021 I 0.889
Carubv10023675m.g Capsella rubella Carubv10023675m.g I 0.870
Bra021860 Brassica rapa Bra021860 I 0.870
Bra005486 Brassica rapa Bra005486 I 0.870
Bo4g043600 Brassica oleracea Bo4g043600 I 0.870
Thhalv10016974m.g Eutrema salsugineum Thhalv10016974m.g I 0.870
Bo4g182020 Brassica oleracea Bo4g182020 I 0.870
Bostr.23794s0746 Boechera stricta Bostr.23794s0746 I 0.870
scaffold_401930.1 Arabidopsis lyrata scaffold_401930.1 I 0.870
VIT_01s0150g00050 Vitis vinifera VIT_01s0150g00050 I 0.820
Cucsa.349220 Cucumis sativus Cucsa.349220 I 0.820
Eucgr.B03553 Eucalyptus grandis Eucgr.B03553 I 0.820
Pm024597 Prunus mume Pm024597 I 0.807
cassava40545.m1 Manihot esculenta cassava40545.m1 I 0.799
Cla001502 Citrullus lanatus Cla001502 I 0.780
PK25885.1 Cannabis sativa PK25885.1 I 0.765
GLYMA18G51790 Glycine max GLYMA18G51790 I 0.758
chr1.LjT14I13.140.nd Lotus japonicus chr1.LjT14I13.140.nd I 0.758
GLYMA08G28880 Glycine max GLYMA08G28880 I 0.758
MDP0000232058 Malus domestica MDP0000232058 I 0.749
AMTR_s00025p00072580 Amborella trichopoda AMTR_s00025p00072580 I 0.740
VIT_17s0000g00270 Vitis vinifera VIT_17s0000g00270 I 0.736
orange1.1g038571m.g Citrus sinensis orange1.1g038571m.g I 0.712
Ciclev10033491m.g Citrus clementina Ciclev10033491m.g I 0.703
Si017674m.g Setaria italica Si017674m.g I 0.691