CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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POPTR_0001s24220
(
Populus trichocarpa
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00249 (Myb_DNA-binding)
IPR014778
POPTR_0001s24220
T278194_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
MYB59
M00883_2.00
Arabidopsis thaliana
NKACCTAAYN
NRTTAGGTMN
PBM
Franco-Zorrilla et al.(2014)
MYB59
0.906
0.946
MYB62
M07027_2.00
Arabidopsis thaliana
NHRCCTAAYTWNHNN
NNDNWARTTAGGYDN
Dap-seq
OMalley et al.(2016)
MYB62_col_a
0.662
0.677
MYB62
M07028_2.00
Arabidopsis thaliana
HNKRCCTAACTHH
DDAGTTAGGYMND
Dap-seq
OMalley et al.(2016)
MYB62_colamp_a
0.662
0.677
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
POPTR_0001s24220.1
Myb
8
55
KGPWTEKEDILLINFVHLFGDRRWDSIAKVSGLNRTGKSCRLRWVNYL
POPTR_0001s24220.1
Myb
61
106
RGKMTPQEERLVLELHAKWGNRWSRIARKLPGRTDNEIKNYWRTHM
Links
Other
Myb/SANT
family TFs
Other
Populus trichocarpa
TFs
305 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy