CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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POPTR_0001s24840
(
Populus trichocarpa
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00249 (Myb_DNA-binding)
IPR014778
POPTR_0001s24840
T278195_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PK21687.1
M01282_2.00
Cannabis sativa
HWAAACCYH
DRGGTTTWD
PBM
Lambert et al.(2019)
pTH11299
0.909
0.979
TRP2
M07092_2.00
Arabidopsis thaliana
AAACCCTAAACCCTAAACCC
GGGTTTAGGGTTTAGGGTTT
Dap-seq
OMalley et al.(2016)
TRP2_col_a
0.901
0.957
TRP2
M07093_2.00
Arabidopsis thaliana
AAACCCTAAACCCTAAACCCT
AGGGTTTAGGGTTTAGGGTTT
Dap-seq
OMalley et al.(2016)
TRP2_colamp_a
0.901
0.957
TRP1
M07148_2.00
Arabidopsis thaliana
AAACCCTAAACCCTAAACCCTAA
TTAGGGTTTAGGGTTTAGGGTTT
Dap-seq
OMalley et al.(2016)
TRP1_col
0.891
0.979
TRP5
M01266_2.00
Arabidopsis thaliana
NHWAAACCYH
DRGGTTTWDN
PBM
Lambert et al.(2019)
pTH9963
0.849
0.979
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
POPTR_0001s24840.1
Myb
585
635
RRPFSVAEVEALVQAVEKLGTGRWRDVKLRAFDNAKHRTYVDLKDKWKTLV
Links
Other
Myb/SANT
family TFs
Other
Populus trichocarpa
TFs
197 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
30068.m002544
Ricinus communis
30068.m002544
I
0.000
AMTR_s00024p00250970
Amborella trichopoda
AMTR_s00024p00250970
I
0.000
AMTR_s00030p00146410
Amborella trichopoda
AMTR_s00030p00146410
I
0.000
AMTR_s00068p00092800
Amborella trichopoda
AMTR_s00068p00092800
I
0.000
AMTR_s00068p00097220
Amborella trichopoda
AMTR_s00068p00097220
I
0.000
AMTR_s00068p00099460
Amborella trichopoda
AMTR_s00068p00099460
I
0.000
AMTR_s00068p00118480
Amborella trichopoda
AMTR_s00068p00118480
I
0.000
Aquca_009_00493
Aquilegia coerulea
Aquca_009_00493
I
0.000
Aquca_009_00496
Aquilegia coerulea
Aquca_009_00496
I
0.000
MYB5
Arabidopsis thaliana
AT3G13540
I
0.000
MYB305
Arabidopsis thaliana
AT3G24310
I
0.000
ATMYB121
Arabidopsis thaliana
AT3G30210
D
0.000
MYB27
Arabidopsis thaliana
AT3G53200
D
0.000
AtMYB79
Arabidopsis thaliana
AT4G13480
I
0.000
BGIOSGA004260
Oryza indica
BGIOSGA004260
I
0.000
BGIOSGA006030
Oryza indica
BGIOSGA006030
I
0.000
BGIOSGA014750
Oryza indica
BGIOSGA014750
I
0.000
Bo1g098860
Brassica oleracea
Bo1g098860
I
0.000
Bo1g138250
Brassica oleracea
Bo1g138250
I
0.000
Bo3g083130
Brassica oleracea
Bo3g083130
I
0.000
Bo6g067190
Brassica oleracea
Bo6g067190
I
0.000
Bo7g033260
Brassica oleracea
Bo7g033260
I
0.000
Bo7g088650
Brassica oleracea
Bo7g088650
I
0.000
Bo9g009020
Brassica oleracea
Bo9g009020
I
0.000
Bostr.0556s0619
Boechera stricta
Bostr.0556s0619
I
0.000
Bostr.19424s0195
Boechera stricta
Bostr.19424s0195
I
0.000
Bostr.2021s0106
Boechera stricta
Bostr.2021s0106
I
0.000
Bostr.3640s0147
Boechera stricta
Bostr.3640s0147
I
0.000
Bostr.9544s0002
Boechera stricta
Bostr.9544s0002
I
0.000
Bra001941
Brassica rapa
Bra001941
I
0.000
Bra015029
Brassica rapa
Bra015029
I
0.000
Bra025410
Brassica rapa
Bra025410
I
0.000
Bra027423
Brassica rapa
Bra027423
I
0.000
Bra028369
Brassica rapa
Bra028369
I
0.000
Bra028550
Brassica rapa
Bra028550
I
0.000
Bra039395
Brassica rapa
Bra039395
I
0.000
BRADI2G47367
Brachypodium distachyon
BRADI2G47367
I
0.000
Cagra.0612s0043
Capsella grandiflora
Cagra.0612s0043
I
0.000
Cagra.0690s0007
Capsella grandiflora
Cagra.0690s0007
I
0.000
Cagra.1138s0003
Capsella grandiflora
Cagra.1138s0003
I
0.000
Carubv10014367m.g
Capsella rubella
Carubv10014367m.g
I
0.000
Carubv10014443m.g
Capsella rubella
Carubv10014443m.g
I
0.000
Carubv10018530m.g
Capsella rubella
Carubv10018530m.g
I
0.000
Carubv10019409m.g
Capsella rubella
Carubv10019409m.g
I
0.000
cassava24389.valid.m1
Manihot esculenta
cassava24389.valid.m1
I
0.000
cassava24463.valid.m1
Manihot esculenta
cassava24463.valid.m1
I
0.000
cassava25868.m1
Manihot esculenta
cassava25868.m1
I
0.000
cassava27189.m1
Manihot esculenta
cassava27189.m1
I
0.000
cassava28986.valid.m1
Manihot esculenta
cassava28986.valid.m1
I
0.000
cassava36364.valid.m1
Manihot esculenta
cassava36364.valid.m1
I
0.000
cassava6348.valid.m1
Manihot esculenta
cassava6348.valid.m1
I
0.000
cassava9274.m1
Manihot esculenta
cassava9274.m1
I
0.000
Ca_01329
Cicer arietinum
Ca_01329
I
0.000
Ca_17627
Cicer arietinum
Ca_17627
I
0.000
chr1.CM0105.50.nd
Lotus japonicus
chr1.CM0105.50.nd
I
0.000
Ciclev10006914m.g
Citrus clementina
Ciclev10006914m.g
I
0.000
Ciclev10013466m.g
Citrus clementina
Ciclev10013466m.g
I
0.000
Ciclev10015648m.g
Citrus clementina
Ciclev10015648m.g
I
0.000
Ciclev10021571m.g
Citrus clementina
Ciclev10021571m.g
I
0.000
Cla007745
Citrullus lanatus
Cla007745
I
0.000
Cla021798
Citrullus lanatus
Cla021798
I
0.000
Cucsa.238540
Cucumis sativus
Cucsa.238540
I
0.000
Cucsa.255900
Cucumis sativus
Cucsa.255900
I
0.000
Cucsa.383230
Cucumis sativus
Cucsa.383230
I
0.000
Eucgr.A01648
Eucalyptus grandis
Eucgr.A01648
I
0.000
Eucgr.A02110
Eucalyptus grandis
Eucgr.A02110
I
0.000
Eucgr.B03606
Eucalyptus grandis
Eucgr.B03606
I
0.000
Eucgr.C00826
Eucalyptus grandis
Eucgr.C00826
I
0.000
Eucgr.D01701
Eucalyptus grandis
Eucgr.D01701
I
0.000
Eucgr.D02390
Eucalyptus grandis
Eucgr.D02390
I
0.000
Eucgr.E01031
Eucalyptus grandis
Eucgr.E01031
I
0.000
Eucgr.I02057
Eucalyptus grandis
Eucgr.I02057
I
0.000
Eucgr.K01504
Eucalyptus grandis
Eucgr.K01504
I
0.000
evm.TU.supercontig_119.55
Carica papaya
evm.TU.supercontig_119.55
I
0.000
evm.TU.supercontig_49.71
Carica papaya
evm.TU.supercontig_49.71
I
0.000
evm.TU.supercontig_51.138
Carica papaya
evm.TU.supercontig_51.138
I
0.000
evm.TU.supercontig_51.139
Carica papaya
evm.TU.supercontig_51.139
I
0.000
evm.TU.supercontig_59.23
Carica papaya
evm.TU.supercontig_59.23
I
0.000
evm.TU.supercontig_92.99
Carica papaya
evm.TU.supercontig_92.99
I
0.000
evm.TU.supercontig_96.57
Carica papaya
evm.TU.supercontig_96.57
I
0.000
e_gw1.61.201.1
Physcomitrella patens
e_gw1.61.201.1
I
0.000
F775_19148
Aegilops tauschii
F775_19148
I
0.000
F775_42516
Aegilops tauschii
F775_42516
I
0.000
fgenesh2_kg.3__2645__AT3G24310.1
Arabidopsis lyrata
fgenesh2_kg.3__2645__AT3G24310.1
I
0.000
AtMYB27
Arabidopsis lyrata
fgenesh2_kg.5__1687__AT3G53200.1
I
0.000
ATMYB121
Arabidopsis lyrata
fgenesh2_kg.5__710__AT3G30210.1
I
0.000
fgenesh2_kg.9__1__AT4G13480.1
Arabidopsis lyrata
fgenesh2_kg.9__1__AT4G13480.1
I
0.000
gene12738-v1.0-hybrid
Fragaria vesca
gene12738-v1.0-hybrid
I
0.000
gene15392-v1.0-hybrid
Fragaria vesca
gene15392-v1.0-hybrid
I
0.000
gene18691-v1.0-hybrid
Fragaria vesca
gene18691-v1.0-hybrid
I
0.000
GLYMA10G26681
Glycine max
GLYMA10G26681
I
0.000
GLYMA10G35061
Glycine max
GLYMA10G35061
I
0.000
GLYMA13G09980
Glycine max
GLYMA13G09980
I
0.000
GLYMA13G16890
Glycine max
GLYMA13G16890
I
0.000
GLYMA14G24500
Glycine max
GLYMA14G24500
I
0.000
GLYMA17G05831
Glycine max
GLYMA17G05831
I
0.000
GLYMA17G17560
Glycine max
GLYMA17G17560
I
0.000
GLYMA19G44660
Glycine max
GLYMA19G44660
I
0.000
GLYMA20G32500
Glycine max
GLYMA20G32500
I
0.000
Gorai.004G130900
Gossypium raimondii
Gorai.004G130900
I
0.000
Gorai.004G150800
Gossypium raimondii
Gorai.004G150800
I
0.000
Gorai.006G073500
Gossypium raimondii
Gorai.006G073500
I
0.000
Gorai.006G254200
Gossypium raimondii
Gorai.006G254200
I
0.000
Gorai.007G260600
Gossypium raimondii
Gorai.007G260600
I
0.000
Gorai.007G312700
Gossypium raimondii
Gorai.007G312700
I
0.000
Gorai.007G350500
Gossypium raimondii
Gorai.007G350500
I
0.000
Gorai.008G126700
Gossypium raimondii
Gorai.008G126700
I
0.000
Gorai.010G087200
Gossypium raimondii
Gorai.010G087200
I
0.000
Gorai.013G114900
Gossypium raimondii
Gorai.013G114900
I
0.000
GRMZM2G027697
Zea mays
GRMZM2G027697
I
0.000
GRMZM2G395672
Zea mays
GRMZM2G395672
I
0.000
GSMUA_Achr10G14030_001
Musa acuminata
GSMUA_Achr10G14030_001
I
0.000
GSMUA_Achr1G03450_001
Musa acuminata
GSMUA_Achr1G03450_001
I
0.000
GSMUA_Achr3G07950_001
Musa acuminata
GSMUA_Achr3G07950_001
I
0.000
GSMUA_Achr5G06530_001
Musa acuminata
GSMUA_Achr5G06530_001
I
0.000
GSMUA_Achr6G14840_001
Musa acuminata
GSMUA_Achr6G14840_001
I
0.000
GSMUA_Achr7G05570_001
Musa acuminata
GSMUA_Achr7G05570_001
I
0.000
GSMUA_Achr7G13700_001
Musa acuminata
GSMUA_Achr7G13700_001
I
0.000
GSMUA_Achr8G10800_001
Musa acuminata
GSMUA_Achr8G10800_001
I
0.000
LjSGA_023691.1
Lotus japonicus
LjSGA_023691.1
I
0.000
LjT20L14.140.nd
Lotus japonicus
LjT20L14.140.nd
I
0.000
LPERR01G23630
Leersia perrieri
LPERR01G23630
I
0.000
LPERR04G14700
Leersia perrieri
LPERR04G14700
I
0.000
Lus10013762.g
Linum usitatissimum
Lus10013762.g
I
0.000
Lus10023711.g
Linum usitatissimum
Lus10023711.g
I
0.000
Lus10039173.g
Linum usitatissimum
Lus10039173.g
I
0.000
MDP0000140609
Malus domestica
MDP0000140609
I
0.000
MDP0000196982
Malus domestica
MDP0000196982
I
0.000
MDP0000655330
Malus domestica
MDP0000655330
I
0.000
MDP0000723614
Malus domestica
MDP0000723614
I
0.000
MDP0000791870
Malus domestica
MDP0000791870
I
0.000
MDP0000887107
Malus domestica
MDP0000887107
I
0.000
MDP0000915330
Malus domestica
MDP0000915330
I
0.000
mgf001865m
Mimulus guttatus
mgf001865m
I
0.000
mgf004640m
Mimulus guttatus
mgf004640m
I
0.000
MLOC_16037
Hordeum vulgare
MLOC_16037
I
0.000
MLOC_6786
Hordeum vulgare
MLOC_6786
I
0.000
MTR_1g062940
Medicago truncatula
MTR_1g062940
N
0.000
MTR_3g083540
Medicago truncatula
MTR_3g083540
I
0.000
MTR_7g117730
Medicago truncatula
MTR_7g117730
I
0.000
OB01G22230
Oryza brachyantha
OB01G22230
I
0.000
OB02G31640
Oryza brachyantha
OB02G31640
I
0.000
OB04G25360
Oryza brachyantha
OB04G25360
I
0.000
OBART02G24300
Oryza barthii
OBART02G24300
I
0.000
OGLUM02G24660
Oryza glumaepatula
OGLUM02G24660
I
0.000
OLONG_002608
Oryza longistaminata
OLONG_002608
I
0.000
OMERI02G23750
Oryza meridionalis
OMERI02G23750
I
0.000
ONIVA09G12460
Oryza nivara
ONIVA09G12460
I
0.000
OPUNC02G22200
Oryza punctata
OPUNC02G22200
I
0.000
orange1.1g036215m.g
Citrus sinensis
orange1.1g036215m.g
I
0.000
orange1.1g040726m.g
Citrus sinensis
orange1.1g040726m.g
I
0.000
orange1.1g040841m.g
Citrus sinensis
orange1.1g040841m.g
I
0.000
orange1.1g047839m.g
Citrus sinensis
orange1.1g047839m.g
I
0.000
orange1.1g047854m.g
Citrus sinensis
orange1.1g047854m.g
I
0.000
ORGLA01G0227100
Oryza glaberrima
ORGLA01G0227100
I
0.000
ORGLA02G0210000
Oryza glaberrima
ORGLA02G0210000
I
0.000
ORGLA04G0153500
Oryza glaberrima
ORGLA04G0153500
I
0.000
ORUFI01G30610
Oryza rufipogon
ORUFI01G30610
I
0.000
ORUFI02G25650
Oryza rufipogon
ORUFI02G25650
I
0.000
ORUFI04G19690
Oryza rufipogon
ORUFI04G19690
I
0.000
OS01G0695900
Oryza sativa
OS01G0695900
I
0.000
OS02G0618400
Oryza sativa
OS02G0618400
I
0.000
OS04G0508500
Oryza sativa
OS04G0508500
I
0.000
Pavir.Aa01294
Panicum virgatum
Pavir.Aa01294
I
0.000
Pavir.Ga01308
Panicum virgatum
Pavir.Ga01308
I
0.000
Pavir.J31180
Panicum virgatum
Pavir.J31180
I
0.000
Pavir.J37992
Panicum virgatum
Pavir.J37992
I
0.000
PDK_20s1310471g002
Phoenix dactylifera
PDK_20s1310471g002
I
0.000
PGSC0003DMG400001376
Solanum tuberosum
PGSC0003DMG400001376
I
0.000
PK13689.1
Cannabis sativa
PK13689.1
I
0.000
PK14784.1
Cannabis sativa
PK14784.1
I
0.000
Pm009050
Prunus mume
Pm009050
I
0.000
Pm015392
Prunus mume
Pm015392
I
0.000
Pm018338
Prunus mume
Pm018338
I
0.000
Pm027048
Prunus mume
Pm027048
I
0.000
POPTR_0001s04240
Populus trichocarpa
POPTR_0001s04240
I
0.000
POPTR_0001s11100
Populus trichocarpa
POPTR_0001s11100
I
0.000
POPTR_0003s14420
Populus trichocarpa
POPTR_0003s14420
I
0.000
POPTR_0003s21120
Populus trichocarpa
POPTR_0003s21120
I
0.000
POPTR_0012s05200
Populus trichocarpa
POPTR_0012s05200
I
0.000
POPTR_0013s05300
Populus trichocarpa
POPTR_0013s05300
I
0.000
POPTR_0013s05310
Populus trichocarpa
POPTR_0013s05310
I
0.000
POPTR_0015s03770
Populus trichocarpa
POPTR_0015s03770
I
0.000
POPTR_0019s05190
Populus trichocarpa
POPTR_0019s05190
I
0.000
POPTR_0019s05200
Populus trichocarpa
POPTR_0019s05200
I
0.000
POPTR_0019s05210
Populus trichocarpa
POPTR_0019s05210
I
0.000
PRUPE_ppa006730mg
Prunus persica
PRUPE_ppa006730mg
I
0.000
PRUPE_ppa009439mg
Prunus persica
PRUPE_ppa009439mg
I
0.000
PRUPE_ppa016385mg
Prunus persica
PRUPE_ppa016385mg
I
0.000
PRUPE_ppa017136mg
Prunus persica
PRUPE_ppa017136mg
I
0.000
PRUPE_ppa024234mg
Prunus persica
PRUPE_ppa024234mg
I
0.000
Q2TCH0_PETHY
Petunia x hybrida
Q2TCH0_PETHY
D
0.000
SapurV1A.0059s0150
Salix purpurea
SapurV1A.0059s0150
I
0.000
SapurV1A.0059s0160
Salix purpurea
SapurV1A.0059s0160
I
0.000
SapurV1A.0081s0400
Salix purpurea
SapurV1A.0081s0400
I
0.000
SapurV1A.0530s0020
Salix purpurea
SapurV1A.0530s0020
I
0.000
SapurV1A.0553s0100
Salix purpurea
SapurV1A.0553s0100
I
0.000
SapurV1A.0553s0110
Salix purpurea
SapurV1A.0553s0110
I
0.000
SapurV1A.0598s0010
Salix purpurea
SapurV1A.0598s0010
I
0.000
SapurV1A.0918s0130
Salix purpurea
SapurV1A.0918s0130
I
0.000
SapurV1A.0989s0120
Salix purpurea
SapurV1A.0989s0120
I
0.000
SapurV1A.1276s0050
Salix purpurea
SapurV1A.1276s0050
I
0.000
SapurV1A.1276s0060
Salix purpurea
SapurV1A.1276s0060
I
0.000
SapurV1A.1621s0010
Salix purpurea
SapurV1A.1621s0010
I
0.000
SapurV1A.2885s0020
Salix purpurea
SapurV1A.2885s0020
I
0.000
Sb04g026210
Sorghum bicolor
Sb04g026210
I
0.000
ATMYB5
Arabidopsis lyrata
scaffold_301556.1
I
0.000
Si004316m.g
Setaria italica
Si004316m.g
I
0.000
Si010822m.g
Setaria italica
Si010822m.g
I
0.000
Si018007m.g
Setaria italica
Si018007m.g
I
0.000
Solyc01g005660.1
Solanum lycopersicum
Solyc01g005660.1
I
0.000
Solyc02g089190.1
Solanum lycopersicum
Solyc02g089190.1
I
0.000
TCM_012363
Theobroma cacao
TCM_012363
I
0.000
TCM_015685
Theobroma cacao
TCM_015685
I
0.000
TCM_018971
Theobroma cacao
TCM_018971
I
0.000
TCM_021037
Theobroma cacao
TCM_021037
I
0.000
TCM_024180
Theobroma cacao
TCM_024180
I
0.000
TCM_025910
Theobroma cacao
TCM_025910
I
0.000
TCM_037377
Theobroma cacao
TCM_037377
I
0.000
Thhalv10002634m.g
Eutrema salsugineum
Thhalv10002634m.g
I
0.000
Thhalv10005370m.g
Eutrema salsugineum
Thhalv10005370m.g
I
0.000
Thhalv10010915m.g
Eutrema salsugineum
Thhalv10010915m.g
I
0.000
Thhalv10022057m.g
Eutrema salsugineum
Thhalv10022057m.g
I
0.000
TRAES3BF026500080CFD_g
Triticum aestivum
TRAES3BF026500080CFD_g
I
0.000
Traes_4DL_26A958CDD
Triticum aestivum
Traes_4DL_26A958CDD
I
0.000
Traes_6BL_8E4A831B6
Triticum aestivum
Traes_6BL_8E4A831B6
I
0.000
VIT_05s0049g02260
Vitis vinifera
VIT_05s0049g02260
I
0.000
VIT_06s0004g00570
Vitis vinifera
VIT_06s0004g00570
I
0.000
VIT_08s0007g07230
Vitis vinifera
VIT_08s0007g07230
I
0.000
VIT_11s0016g01300
Vitis vinifera
VIT_11s0016g01300
I
0.000
VIT_15s0046g00170
Vitis vinifera
VIT_15s0046g00170
I
0.000