POPTR_0002s05770 (Populus trichocarpa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 POPTR_0002s05770 T278211_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PK05732.1
M01276_2.00
Cannabis sativa
HNATTCBNN

NNVGAATND
PBM
Lambert et al.(2019)
pTH11367
0.705 0.787
PHR1
M02302_2.00
Arabidopsis thaliana
NWKATNCBNN

NNVGNATMWN
PBM
Weirauch et al.(2014)
pTH7249
0.679 0.681
AT1G14600
M01268_2.00
Arabidopsis thaliana
NWAYATTCYN

NRGAATRTWN
PBM
Lambert et al.(2019)
pTH11557
0.667 0.681
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0002s05770.1 Myb 19 70

Links

Other Myb/SANT family TFs
Other Populus trichocarpa TFs

80 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
SapurV1A.0354s0280 Salix purpurea SapurV1A.0354s0280 I 0.823
Pm014775 Prunus mume Pm014775 I 0.808
MDP0000244794 Malus domestica MDP0000244794 I 0.792
Eucgr.A02031 Eucalyptus grandis Eucgr.A02031 I 0.773
TCM_001942 Theobroma cacao TCM_001942 I 0.771
GLYMA14G03527 Glycine max GLYMA14G03527 I 0.760
LjSGA_025887.1 Lotus japonicus LjSGA_025887.1 N 0.760
PRUPE_ppa023518mg Prunus persica PRUPE_ppa023518mg I 0.755
SapurV1A.1979s0020 Salix purpurea SapurV1A.1979s0020 N 0.751
SapurV1A.0076s0110 Salix purpurea SapurV1A.0076s0110 N 0.751
GLYMA02G45231 Glycine max GLYMA02G45231 I 0.744
POPTR_0005s22750 Populus trichocarpa POPTR_0005s22750 N 0.741
SapurV1A.0429s0100 Salix purpurea SapurV1A.0429s0100 I 0.735
SapurV1A.3361s0010 Salix purpurea SapurV1A.3361s0010 I 0.735
chr5.LjT14K23.60.nc Lotus japonicus chr5.LjT14K23.60.nc I 0.732
Bostr.24340s0004 Boechera stricta Bostr.24340s0004 I 0.727
Lus10029808.g Linum usitatissimum Lus10029808.g I 0.725
GLYMA20G24290 Glycine max GLYMA20G24290 I 0.714
Eucgr.D01346 Eucalyptus grandis Eucgr.D01346 I 0.709
GLYMA18G14071 Glycine max GLYMA18G14071 I 0.707
PK05732.1 Cannabis sativa PK05732.1 D 0.705
VIT_12s0028g00980 Vitis vinifera VIT_12s0028g00980 I 0.701
GLYMA08G41735 Glycine max GLYMA08G41735 I 0.699
VIT_00s1624g00010 Vitis vinifera VIT_00s1624g00010 I 0.696
Lus10001149.g Linum usitatissimum Lus10001149.g I 0.693
Thhalv10017090m.g Eutrema salsugineum Thhalv10017090m.g I 0.693
cassava11204.m1 Manihot esculenta cassava11204.m1 I 0.689
Aquca_066_00001 Aquilegia coerulea Aquca_066_00001 I 0.686
Bostr.0556s0031 Boechera stricta Bostr.0556s0031 I 0.685
AT2G02060 Arabidopsis thaliana AT2G02060 I 0.685
Bra026618 Brassica rapa Bra026618 I 0.685
fgenesh2_kg.5__121__AT2G02060.1 Arabidopsis lyrata fgenesh2_kg.5__121__AT2G02060.1 I 0.685
Cagra.0549s0004 Capsella grandiflora Cagra.0549s0004 I 0.685
Thhalv10004791m.g Eutrema salsugineum Thhalv10004791m.g I 0.685
Carubv10017538m.g Capsella rubella Carubv10017538m.g I 0.685
CHLREDRAFT_196473 Chlamydomonas reinhardtii CHLREDRAFT_196473 I 0.681
MLOC_56821 Hordeum vulgare MLOC_56821 I 0.680
GRMZM2G069525 Zea mays GRMZM2G069525 I 0.680
Bo7g080160 Brassica oleracea Bo7g080160 I 0.679
Cagra.1225s0029 Capsella grandiflora Cagra.1225s0029 I 0.679
PHR1 Arabidopsis thaliana AT4G28610 D 0.679
Bostr.7867s0704 Boechera stricta Bostr.7867s0704 I 0.679
Bo8g054450 Brassica oleracea Bo8g054450 I 0.679
Bra010355 Brassica rapa Bra010355 I 0.679
Thhalv10025330m.g Eutrema salsugineum Thhalv10025330m.g I 0.679
PHR1 Arabidopsis lyrata fgenesh2_kg.7__1335__AT4G28610.1 I 0.679
Bra024836 Brassica rapa Bra024836 I 0.679
Bo2g134900 Brassica oleracea Bo2g134900 I 0.678
Gorai.010G181100 Gossypium raimondii Gorai.010G181100 I 0.675
orange1.1g029903m.g Citrus sinensis orange1.1g029903m.g I 0.675
Ciclev10032941m.g Citrus clementina Ciclev10032941m.g I 0.675
POPTR_0021s00430 Populus trichocarpa POPTR_0021s00430 I 0.675
PDK_20s1498711g001 Phoenix dactylifera PDK_20s1498711g001 I 0.675
POPTR_0004s01060 Populus trichocarpa POPTR_0004s01060 I 0.675
GLYMA09G00685 Glycine max GLYMA09G00685 I 0.675
PRUPE_ppa015662mg Prunus persica PRUPE_ppa015662mg I 0.675
TCM_030248 Theobroma cacao TCM_030248 I 0.675
cassava15362.m1 Manihot esculenta cassava15362.m1 I 0.675
29842.m003572 Ricinus communis 29842.m003572 I 0.675
Ca_00645 Cicer arietinum Ca_00645 I 0.675
GLYMA15G11576 Glycine max GLYMA15G11576 I 0.675
POPTR_0010s10990 Populus trichocarpa POPTR_0010s10990 I 0.672
GSMUA_Achr5G19200_001 Musa acuminata GSMUA_Achr5G19200_001 I 0.672
PGSC0003DMG400029440 Solanum tuberosum PGSC0003DMG400029440 I 0.672
Cucsa.058770 Cucumis sativus Cucsa.058770 I 0.671
VIT_13s0067g01500 Vitis vinifera VIT_13s0067g01500 I 0.669
mgf023762m Mimulus guttatus mgf023762m I 0.669
Gorai.009G329400 Gossypium raimondii Gorai.009G329400 I 0.669
MTR_2g016220 Medicago truncatula MTR_2g016220 I 0.668
fgenesh2_kg.1__1592__AT1G14600.1 Arabidopsis lyrata fgenesh2_kg.1__1592__AT1G14600.1 I 0.667
Bra026202 Brassica rapa Bra026202 I 0.667
Bo5g019810 Brassica oleracea Bo5g019810 I 0.667
MTR_2g023580 Medicago truncatula MTR_2g023580 I 0.667
AT1G14600 Arabidopsis thaliana AT1G14600 D 0.667
MDP0000196504 Malus domestica MDP0000196504 I 0.667
Carubv10010057m.g Capsella rubella Carubv10010057m.g I 0.667
Cagra.3501s0036 Capsella grandiflora Cagra.3501s0036 I 0.667
MDP0000214282 Malus domestica MDP0000214282 I 0.667
Thhalv10008620m.g Eutrema salsugineum Thhalv10008620m.g I 0.667
BRADI1G71910 Brachypodium distachyon BRADI1G71910 I 0.661